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MS002239 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002239
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReplication protein A 32 kDa subunit B
Genome locationscaffold30:3547475..3548047
RNA-Seq ExpressionMS002239
SyntenyMS002239
Gene Ontology termsNA
InterPro domainsIPR007789 - Protein of unknown function DUF688


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]5.9e-4462.81Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N+ FV+KILSRNSSFGRSARL AC LPGQ+PFNWETQPGLPK Q P +  PPA  LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KKNGA  SSS  RR VDRES+   +KSNDES +S   SCISYSLSS+SSSASS+     RRRSKLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]7.5e-3960.64Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW
        +HR L LSE P SLLQ NE+FV+KILSRNSS GRSARL ACRLPGQ+PF WE QPGLPK   P +NL P    PP   S +   + P    +QQE  ++W
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW

Query:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS-SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVR
        FW KP++K        V KKNGAF   SSSRR V++ES +  +KSNDESS+S SCIS+SLSSSSS  SSNGY RRRSKL  LAKGF+R
Subjt:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS-SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVR

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]1.0e-4361.62Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N++FV+KILSRNSSFGRSARL AC LPGQVPFNWE QPGLPK Q  D   PP + LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS-RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KK+GA  SSS RR VDR+S+   KKSNDESS+S   SCISYS+SS+SSSASS+     RRR KLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS-RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]3.0e-4362.31Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N+ FV+KILSRNSSFGRSARL AC LPGQ+PFNWETQPGLPK Q P +  PPA  LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSND---ESSTSSCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KKNGA  SSS  RR VDRES+   +KSND    SS+ SCISYSLSS+SSSASS+     RRRSKLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSND---ESSTSSCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]6.8e-4059.18Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW
        DHR L  SE P SLLQ NE+FV+KILSRNSS GRSARL ACRLPGQ+PF WE QPGLPK   P +NL P    PPP    +   + P    +QQE  ++W
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW

Query:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS------SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVRWAF
         W KP++K        V KKNGAF   SSSR  V++ES + C+KSNDESS+S      SCIS+SLSSSSS  SSNGY RRRSKL  LAKGF+RWAF
Subjt:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS------SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVRWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein4.9e-4461.62Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N++FV+KILSRNSSFGRSARL AC LPGQVPFNWE QPGLPK Q  D   PP + LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS-RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KK+GA  SSS RR VDR+S+   KKSNDESS+S   SCISYS+SS+SSSASS+     RRR KLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS-RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

A0A5A7UQX0 Uncharacterized protein2.9e-4462.81Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N+ FV+KILSRNSSFGRSARL AC LPGQ+PFNWETQPGLPK Q P +  PPA  LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KKNGA  SSS  RR VDRES+   +KSNDES +S   SCISYSLSS+SSSASS+     RRRSKLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSNDESSTS---SCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

A0A5D3CKX4 Uncharacterized protein1.4e-4362.31Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP
        DH L  LSEKP SLLQ N+ FV+KILSRNSSFGRSARL AC LPGQ+PFNWETQPGLPK Q P +  PPA  LPPP+ SA  L    H VPK     Q P
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHL----HEVPKPPQQQQEP

Query:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSND---ESSTSSCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF
        +++WFW K +RK+ R       KKNGA  SSS  RR VDRES+   +KSND    SS+ SCISYSLSS+SSSASS+     RRRSKLG LAK F+RWAF
Subjt:  LRVWFWKKPKRKAVRHNNNAVPKKNGAFDSSS--RRRVDRESDQLCKKSND---ESSTSSCISYSLSSSSSSASSNG--YGRRRSKLGRLAKGFVRWAF

A0A6J1JJ17 uncharacterized protein LOC1114850373.3e-4059.18Show/hide
Query:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW
        DHR L  SE P SLLQ NE+FV+KILSRNSS GRSARL ACRLPGQ+PF WE QPGLPK   P +NL P    PPP    +   + P    +QQE  ++W
Subjt:  DHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVW

Query:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS------SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVRWAF
         W KP++K        V KKNGAF   SSSR  V++ES + C+KSNDESS+S      SCIS+SLSSSSS  SSNGY RRRSKL  LAKGF+RWAF
Subjt:  FWKKPKRKAVRHNNNAVPKKNGAF--DSSSRRRVDRESDQLCKKSNDESSTS------SCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVRWAF

A0A6J5TFB4 Uncharacterized protein1.1e-1640.95Show/hide
Query:  KPISLLQENEIFVNKILSRNSSFG-RSARLAACRLPGQVPFNWETQPGLPKLQTPD------QNL-----PPAIALPPPAPSAEHLHEVPKPPQQQQEPL
        K +++   NE+F NKILSRNSS G  S+R    R+ G VPF WE +PG PKL+  D      QN      PP I  PPPA  + +++ +P          
Subjt:  KPISLLQENEIFVNKILSRNSSFG-RSARLAACRLPGQVPFNWETQPGLPKLQTPD------QNL-----PPAIALPPPAPSAEHLHEVPKPPQQQQEPL

Query:  RVWFWK------KPKRKAVRHNNNAVPKKNGAFDSSSRRRVDRESDQLCKKSND-------ESSTSSCISYSLSS------SSSSASSNGYGRRRSKLGR
        RVW WK      K KRK  + N N V    G FD +   ++  ++D LCK   +        SSTSSC S SLSS      SSSS+S++    R SK+ R
Subjt:  RVWFWK------KPKRKAVRHNNNAVPKKNGAFDSSSRRRVDRESDQLCKKSND-------ESSTSSCISYSLSS------SSSSASSNGYGRRRSKLGR

Query:  LAKGFVRWAF
        LA+GF+RWAF
Subjt:  LAKGFVRWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAAATATTGATCATCGTCTTCTTCTTCTGTCTGAGAAACCCATCTCCTTACTCCAAGAAAATGAAATTTTCGTCAACAAAATTCTCTCCAGAAACTCCTCCTTCGGCCG
CTCTGCCCGTCTCGCCGCCTGCCGCCTGCCCGGCCAAGTCCCCTTCAACTGGGAGACACAGCCCGGACTGCCCAAACTCCAAACCCCAGATCAAAATCTCCCGCCGGCGA
TCGCCCTCCCGCCGCCGGCGCCCTCCGCCGAGCACCTCCACGAAGTCCCCAAGCCGCCGCAGCAGCAGCAGGAGCCGCTTCGGGTTTGGTTCTGGAAGAAACCGAAGAGA
AAGGCCGTGAGGCATAACAACAACGCCGTCCCCAAGAAAAACGGTGCGTTCGACTCATCATCCAGACGACGTGTCGATCGCGAGAGTGATCAGTTATGTAAAAAATCAAA
CGACGAGTCGTCCACGTCGTCTTGCATTTCTTACTCTTTATCCTCCAGCTCTTCATCGGCCTCATCTAATGGTTACGGGCGACGCCGCTCCAAACTCGGCCGCCTCGCCA
AGGGCTTCGTAAGGTGGGCCTTC
mRNA sequenceShow/hide mRNA sequence
GCAAATATTGATCATCGTCTTCTTCTTCTGTCTGAGAAACCCATCTCCTTACTCCAAGAAAATGAAATTTTCGTCAACAAAATTCTCTCCAGAAACTCCTCCTTCGGCCG
CTCTGCCCGTCTCGCCGCCTGCCGCCTGCCCGGCCAAGTCCCCTTCAACTGGGAGACACAGCCCGGACTGCCCAAACTCCAAACCCCAGATCAAAATCTCCCGCCGGCGA
TCGCCCTCCCGCCGCCGGCGCCCTCCGCCGAGCACCTCCACGAAGTCCCCAAGCCGCCGCAGCAGCAGCAGGAGCCGCTTCGGGTTTGGTTCTGGAAGAAACCGAAGAGA
AAGGCCGTGAGGCATAACAACAACGCCGTCCCCAAGAAAAACGGTGCGTTCGACTCATCATCCAGACGACGTGTCGATCGCGAGAGTGATCAGTTATGTAAAAAATCAAA
CGACGAGTCGTCCACGTCGTCTTGCATTTCTTACTCTTTATCCTCCAGCTCTTCATCGGCCTCATCTAATGGTTACGGGCGACGCCGCTCCAAACTCGGCCGCCTCGCCA
AGGGCTTCGTAAGGTGGGCCTTC
Protein sequenceShow/hide protein sequence
ANIDHRLLLLSEKPISLLQENEIFVNKILSRNSSFGRSARLAACRLPGQVPFNWETQPGLPKLQTPDQNLPPAIALPPPAPSAEHLHEVPKPPQQQQEPLRVWFWKKPKR
KAVRHNNNAVPKKNGAFDSSSRRRVDRESDQLCKKSNDESSTSSCISYSLSSSSSSASSNGYGRRRSKLGRLAKGFVRWAF