; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002240 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002240
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionOxysterol-binding protein-related protein 4B-like
Genome locationscaffold30:3549444..3550019
RNA-Seq ExpressionMS002240
SyntenyMS002240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587751.1 hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3150.76Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK++K+S L   F+    RF SCGS  C+F++S  +  SSSSS S SS           LP AESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

KAG7021722.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3151.02Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRR
          WRKQ  SK++K+S L   F+    RF SCGS  C+F++S  +  SSSSS S SS           LP AESS   R GCGPW IN ++IAIGRR
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRR

XP_022930189.1 uncharacterized protein LOC111436686 [Cucurbita moschata]1.4e-3251.27Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK++K+S L   F     RF SCGS  C+F++SP +  SSSSS  SS            LPAAESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

XP_023007086.1 uncharacterized protein LOC111499680 [Cucurbita maxima]2.1e-3351.78Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK+KK+S L   F+    RF SCGS  C+F++SP +  SSSSS  SS            LPAAESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

XP_023530969.1 uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]6.2e-3351.78Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+        P+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFD---QRFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK+KK+S L   F+    RF SCGS  C+F++SP +  SSSSS S SS           LPAAESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFD---QRFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

TrEMBL top hitse value%identityAlignment
A0A0A0LUL8 Uncharacterized protein4.8e-3148.48Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY-RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPI-FVGRRPSRYPLF
        MKE K+ + + FVL LD  PSRNSSMS SSR YY R++EGVPFQWEM PGTPKN+      PP   V+ PPISPPPA L  GL KP+  V  +   + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY-RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPI-FVGRRPSRYPLF

Query:  GSWRKQSNSKAKK----YSSLDKSFDQRFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
        G WRKQ   K KK        +K+   RF SCGS  C+ M                   + S  K    PA  SSG WR GCGPW IN IKI +GRR+
Subjt:  GSWRKQSNSKAKK----YSSLDKSFDQRFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

A0A5D3CJV8 Oxysterol-binding protein-related protein 4B-like7.9e-2646.86Show/hide
Query:  MSCSSRLYY-RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPI-FVGRRPSRYPLFGSWRKQSNSKAKKYSS-----LDKS
        MS SSR YY R++EGVPFQWEM PGTPK++      PP   V+PPPISPPPA L  G  KP+  V  + S + LFG WRKQ   K K   +     L+K+
Subjt:  MSCSSRLYY-RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPI-FVGRRPSRYPLFGSWRKQSNSKAKKYSS-----LDKS

Query:  FDQ-RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
         ++ RF SCGS  C+ M                   + S  KD   P  ESSG+WR GCGPW IN IKI +GRR+
Subjt:  FDQ-RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

A0A6J1EQV3 uncharacterized protein LOC1114366866.7e-3351.27Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK++K+S L   F     RF SCGS  C+F++SP +  SSSSS  SS            LPAAESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

A0A6J1KZJ1 uncharacterized protein LOC1114996801.0e-3351.78Show/hide
Query:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF
        MK+ KD+   +FVL LD LPSR SS+ CSSRLYY  R++EGVPFQWEM PGTPK+       PP+   V   I+PPPAAL    PKP     + S + LF
Subjt:  MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLF

Query:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL
          WRKQ  SK+KK+S L   F+    RF SCGS  C+F++SP +  SSSSS  SS            LPAAESS   R GCGPW IN ++IAIGRR+
Subjt:  GSWRKQSNSKAKKYSSLDKSFDQ---RFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL

A0A7J7DSS9 Uncharacterized protein5.0e-2041.26Show/hide
Query:  EDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIF-------VGRRPSRYPL
        +D D + L  DR+ SR+SS+ CSSR+YY  RS+EGVPFQWEM PGTPK+       PP +  + PP+SPPPA +  G+PKP              SR+ L
Subjt:  EDGDQFVLCLDRLPSRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIF-------VGRRPSRYPL

Query:  FGSWRKQSNSKAKKY------SSLDKSFDQRFRSCG--SDGCDFMESPTKTTSSSSSFSSSSFSS--SSISKDPPLPAAES-SGRWRPGCGPWSINTIKI
        + S  K  N K K        S++D   + R   CG  SDG + M +P  + SSSSS SS SFS+  S  S     PA ES  G +  GC P + N++ +
Subjt:  FGSWRKQSNSKAKKY------SSLDKSFDQRFRSCG--SDGCDFMESPTKTTSSSSSFSSSSFSS--SSISKDPPLPAAES-SGRWRPGCGPWSINTIKI

Query:  AIGRRL
         + RR+
Subjt:  AIGRRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G25845.1 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)5.1e-0943.88Show/hide
Query:  SRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSR--YPLFGSWRKQSNSKAKKYSS
        SRNSS+      YY  R  EGVPF+WEM PGTP N        P E V  PP+SPPPA L  GLPKP      P    +P     R   +   K+Y S
Subjt:  SRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSR--YPLFGSWRKQSNSKAKKYSS

AT4G25850.2 OSBP(oxysterol binding protein)-related protein 4B5.1e-0943.88Show/hide
Query:  SRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSR--YPLFGSWRKQSNSKAKKYSS
        SRNSS+      YY  R  EGVPF+WEM PGTP N        P E V  PP+SPPPA L  GLPKP      P    +P     R   +   K+Y S
Subjt:  SRNSSMSCSSRLYY--RSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSR--YPLFGSWRKQSNSKAKKYSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGCGAAGGATGAAGATGGGGATCAATTTGTGCTGTGTTTGGATAGGCTTCCTTCCAGAAACTCTTCTATGAGTTGTTCTTCTCGTTTGTACTACCGGAGCTC
TGAAGGGGTTCCGTTTCAGTGGGAGATGCTTCCGGGGACGCCCAAGAATGATAATATTGATGATATAATTCCGCCGCACGAGGCGGTGGTTCCGCCGCCGATCAGCCCTC
CCCCGGCGGCGCTCGGCCGGGGACTGCCCAAACCCATTTTTGTGGGTCGCCGGCCGAGTAGATACCCGCTGTTTGGGTCGTGGAGGAAGCAATCAAATTCCAAGGCCAAG
AAATATTCTAGTTTGGATAAGTCGTTCGATCAGAGATTTCGGTCTTGTGGATCCGACGGCTGTGATTTTATGGAATCTCCAACCAAAACAACCTCTTCCTCTTCTTCTTT
TTCTTCTTCTTCTTTCTCGTCGTCGTCGATCTCTAAGGATCCGCCCTTGCCGGCGGCGGAATCTTCCGGCCGGTGGCGGCCGGGTTGCGGTCCGTGGAGTATCAACACAA
TTAAAATTGCAATTGGGAGGCGACTT
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGCGAAGGATGAAGATGGGGATCAATTTGTGCTGTGTTTGGATAGGCTTCCTTCCAGAAACTCTTCTATGAGTTGTTCTTCTCGTTTGTACTACCGGAGCTC
TGAAGGGGTTCCGTTTCAGTGGGAGATGCTTCCGGGGACGCCCAAGAATGATAATATTGATGATATAATTCCGCCGCACGAGGCGGTGGTTCCGCCGCCGATCAGCCCTC
CCCCGGCGGCGCTCGGCCGGGGACTGCCCAAACCCATTTTTGTGGGTCGCCGGCCGAGTAGATACCCGCTGTTTGGGTCGTGGAGGAAGCAATCAAATTCCAAGGCCAAG
AAATATTCTAGTTTGGATAAGTCGTTCGATCAGAGATTTCGGTCTTGTGGATCCGACGGCTGTGATTTTATGGAATCTCCAACCAAAACAACCTCTTCCTCTTCTTCTTT
TTCTTCTTCTTCTTTCTCGTCGTCGTCGATCTCTAAGGATCCGCCCTTGCCGGCGGCGGAATCTTCCGGCCGGTGGCGGCCGGGTTGCGGTCCGTGGAGTATCAACACAA
TTAAAATTGCAATTGGGAGGCGACTT
Protein sequenceShow/hide protein sequence
MKEAKDEDGDQFVLCLDRLPSRNSSMSCSSRLYYRSSEGVPFQWEMLPGTPKNDNIDDIIPPHEAVVPPPISPPPAALGRGLPKPIFVGRRPSRYPLFGSWRKQSNSKAK
KYSSLDKSFDQRFRSCGSDGCDFMESPTKTTSSSSSFSSSSFSSSSISKDPPLPAAESSGRWRPGCGPWSINTIKIAIGRRL