; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002252 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002252
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-like zinc finger protein
Genome locationscaffold30:3632451..3632900
RNA-Seq ExpressionMS002252
SyntenyMS002252
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587760.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2755.35Show/hide
Query:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
        MEFKH QLNL L LEPSS S SSSS+      S P     + RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKKSREIR  AY GD   N+ M     
Subjt:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN

Query:  NSNHLWKIET----PPTVIGLCPR---GGHD--AAASGRDHQMRACRPENQDLDLSLRL
        NS HLWK+ET     P VIG  P    GG +    A+   H     + +   LDLSLRL
Subjt:  NSNHLWKIET----PPTVIGLCPR---GGHD--AAASGRDHQMRACRPENQDLDLSLRL

KAG6589714.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2759.01Show/hide
Query:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM
        MEFK H QLNLELVLEPS  S SSS+ V      +PNC  + ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSRE+R  AY GD   N   N+MM
Subjt:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM

Query:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL
          S+HLWK+ET    PP VI     GG D   A   D  +      +Q      LDLSLRL
Subjt:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL

XP_022134801.1 protein LATE FLOWERING [Momordica charantia]3.7e-81100Show/hide
Query:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
        MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
Subjt:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN

Query:  NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL
        NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL
Subjt:  NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL

XP_022921390.1 zinc finger protein 7 [Cucurbita moschata]2.3e-2758.6Show/hide
Query:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM
        MEFK H QLNLELVLEPS  S SSS+ V      +PNC  + ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSRE+R  AY GD   N   N+MM
Subjt:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM

Query:  NNSNHLWKIETPPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL
          S+HLWK+ET      L   GG D   A   D  +      +Q      LDLSLRL
Subjt:  NNSNHLWKIETPPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL

XP_023516743.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]2.3e-2758.64Show/hide
Query:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM
        MEFK H QLNLELVLEPS  S SSS+ V      +PNC  + ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSRE+R  AY GD   N   N+MM
Subjt:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM

Query:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQD------LDLSLRL
          S+HLWK+ET    PP VI     GG D   A   D  +      +Q       LDLSLRL
Subjt:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQD------LDLSLRL

TrEMBL top hitse value%identityAlignment
A0A6J1BYT1 protein LATE FLOWERING1.8e-81100Show/hide
Query:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
        MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
Subjt:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN

Query:  NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL
        NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL
Subjt:  NSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL

A0A6J1E5I0 zinc finger protein 71.1e-2758.6Show/hide
Query:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM
        MEFK H QLNLELVLEPS  S SSS+ V      +PNC  + ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSRE+R  AY GD   N   N+MM
Subjt:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM

Query:  NNSNHLWKIETPPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL
          S+HLWK+ET      L   GG D   A   D  +      +Q      LDLSLRL
Subjt:  NNSNHLWKIETPPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL

A0A6J1JAI3 zinc finger protein 7-like1.9e-2759.01Show/hide
Query:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM
        MEFK H QLNLELVLEPS  S SSS+ V      +PNC  + ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSRE+R  AY GD   N   N+MM
Subjt:  MEFK-HSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMM

Query:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL
          S+HLWK+ET    PP VI     GG D   A   D  +      +Q      LDLSLRL
Subjt:  NNSNHLWKIET----PPTVIGLCPRGGHD-AAASGRDHQMRACRPENQ-----DLDLSLRL

A0A6J1KNT5 zinc finger protein 2-like1.6e-2653.7Show/hide
Query:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN
        MEFKH QLNL L LEPSS S SS SA        P     + RV+ CNYC+RKFYSSQALGGHQNAHKLERTLAKK+REIR  AY GD   N+ M     
Subjt:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMN

Query:  NSNHLWKIET----PPTVIGLCPR---GGHDAAA-SGRDHQMRACRPENQD----LDLSLRL
        NS HLWK+ET     P VIG  P    GG +    +  +H +      +QD    LDLSLRL
Subjt:  NSNHLWKIET----PPTVIGLCPR---GGHDAAA-SGRDHQMRACRPENQD----LDLSLRL

M5XFF7 C2H2-type domain-containing protein7.3e-1944.94Show/hide
Query:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNM--NMM
        +   + Q+NL+LVLEPS  S SSS +             +Q RVFSCNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE    A       N     +  
Subjt:  MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNM--NMM

Query:  MNNSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQ------DLDLSLRL
        +++S+H  +I     + GL    GH    +G  H     RP+N        LDLSLRL
Subjt:  MNNSNHLWKIETPPTVIGLCPRGGHDAAASGRDHQMRACRPENQ------DLDLSLRL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 22.6e-2171.79Show/hide
Query:  FKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREI
        +K+ QLNLELVLEPSS S SSSS+      ++ +C  +Q RVFSCNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE+
Subjt:  FKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREI

Q39262 Zinc finger protein 37.1e-1165.22Show/hide
Query:  QARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYA
        + ++FSCNYC+R FYSSQALGGHQNAHK ERTLAK+ + +   A A
Subjt:  QARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYA

Q39263 Zinc finger protein 41.9e-1156.76Show/hide
Query:  NLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQ-----ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS
        N  L LE SS +   SS  +    S P     Q      RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK++
Subjt:  NLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQ-----ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS

Q39266 Zinc finger protein 72.4e-1185.71Show/hide
Query:  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS
        RVFSCNYC+RKFYSSQALGGHQNAHK ERT+AK++
Subjt:  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS

Q42485 Zinc finger protein 11.9e-1157.53Show/hide
Query:  SQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR
        S+LNL       S+  SSSS   H        D    RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK+ +
Subjt:  SQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 71.7e-1285.71Show/hide
Query:  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS
        RVFSCNYC+RKFYSSQALGGHQNAHK ERT+AK++
Subjt:  RVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS

AT1G66140.1 zinc finger protein 41.3e-1256.76Show/hide
Query:  NLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQ-----ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS
        N  L LE SS +   SS  +    S P     Q      RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK++
Subjt:  NLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQ-----ARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKS

AT1G80730.1 zinc-finger protein 11.3e-1257.53Show/hide
Query:  SQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR
        S+LNL       S+  SSSS   H        D    RVFSCNYC+RKFYSSQALGGHQNAHK ERTLAK+ +
Subjt:  SQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSR

AT5G25160.1 zinc finger protein 35.0e-1265.22Show/hide
Query:  QARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYA
        + ++FSCNYC+R FYSSQALGGHQNAHK ERTLAK+ + +   A A
Subjt:  QARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYA

AT5G57520.1 zinc finger protein 21.8e-2271.79Show/hide
Query:  FKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREI
        +K+ QLNLELVLEPSS S SSSS+      ++ +C  +Q RVFSCNYC+RKFYSSQALGGHQNAHKLERTLAKKSRE+
Subjt:  FKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCAAACACAGCCAACTGAACCTGGAGCTGGTTCTAGAACCCTCTTCATATTCATATTCCTCGTCGTCTGCCGTTGATCATGTGATTGGGAGCACTCCAAATTG
TGATGATGATCAGGCGAGGGTGTTCTCATGCAACTATTGCAAGAGAAAATTTTACAGCTCGCAGGCGTTGGGTGGCCACCAAAATGCGCATAAGCTGGAGAGGACTCTAG
CCAAGAAGAGCAGAGAGATTAGAGGAGGAGCATACGCTGGAGATGAGAGCTGCAACATGAACATGAACATGATGATGAACAATTCGAACCATCTTTGGAAAATTGAGACG
CCACCAACGGTAATTGGGCTTTGCCCACGTGGTGGCCATGATGCTGCTGCGAGTGGGAGAGATCATCAGATGAGGGCATGCCGTCCTGAAAATCAAGACCTTGACTTGTC
TTTAAGGCTG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCAAACACAGCCAACTGAACCTGGAGCTGGTTCTAGAACCCTCTTCATATTCATATTCCTCGTCGTCTGCCGTTGATCATGTGATTGGGAGCACTCCAAATTG
TGATGATGATCAGGCGAGGGTGTTCTCATGCAACTATTGCAAGAGAAAATTTTACAGCTCGCAGGCGTTGGGTGGCCACCAAAATGCGCATAAGCTGGAGAGGACTCTAG
CCAAGAAGAGCAGAGAGATTAGAGGAGGAGCATACGCTGGAGATGAGAGCTGCAACATGAACATGAACATGATGATGAACAATTCGAACCATCTTTGGAAAATTGAGACG
CCACCAACGGTAATTGGGCTTTGCCCACGTGGTGGCCATGATGCTGCTGCGAGTGGGAGAGATCATCAGATGAGGGCATGCCGTCCTGAAAATCAAGACCTTGACTTGTC
TTTAAGGCTG
Protein sequenceShow/hide protein sequence
MEFKHSQLNLELVLEPSSYSYSSSSAVDHVIGSTPNCDDDQARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGGAYAGDESCNMNMNMMMNNSNHLWKIET
PPTVIGLCPRGGHDAAASGRDHQMRACRPENQDLDLSLRL