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MS002272 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002272
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCONSTANS-like zinc finger protein
Genome locationscaffold30:3752976..3753245
RNA-Seq ExpressionMS002272
SyntenyMS002272
Gene Ontology termsGO:0009909 - regulation of flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653155.1 hypothetical protein Csa_020132 [Cucumis sativus]2.5e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

KAG6589727.1 Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4595.56Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL+CDAKIHCANK +SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

XP_008453644.1 PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo]2.5e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

XP_011656660.1 zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus]2.5e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

XP_022134642.1 zinc finger protein CONSTANS-LIKE 5 [Momordica charantia]7.9e-47100Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

TrEMBL top hitse value%identityAlignment
A0A0A0LUG1 Zinc finger protein1.2e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

A0A1S3BXX9 zinc finger protein CONSTANS-LIKE 5-like1.2e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

A0A5A7UXW5 Zinc finger protein CONSTANS-LIKE 5-like1.2e-4596.67Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL CDAKIHCANKL+SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

A0A6J1C060 zinc finger protein CONSTANS-LIKE 53.8e-47100Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

A0A6J1E4Y5 zinc finger protein CONSTANS-LIKE 5-like2.1e-4595.56Show/hide
Query:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        PCDSCKTGPAAVYCRPDSAFLCL+CDAKIHCANK +SRH+RVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
Subjt:  PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

SwissProt top hitse value%identityAlignment
O50055 Zinc finger protein CONSTANS-LIKE 14.8e-3163.64Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP
        CD+C++    VYCR DSA+LC +CDA++H AN+L+SRH+RV +C+ CE+APA   CKADAA+LC TCD++IHSANPLARRH+RVP+ P
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP

Q940T9 Zinc finger protein CONSTANS-LIKE 43.3e-4083.15Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CDSCK+  AA+YCRPD+AFLCL+CD+K+H ANKL+SRH RVWMCEVCEQAPA V CKADAAALCVTCD DIHSANPLARRHERVPV PF
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

Q96502 Zinc finger protein CONSTANS-LIKE 21.1e-3062.5Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP
        CD+C++    VYC  DSA+LC TCDA++H AN+++SRH+RV +C+ CE APA  +CKADAA+LC  CDA+IHSANPLARRH+RVP+ P
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP

Q9FHH8 Zinc finger protein CONSTANS-LIKE 51.1e-3273.03Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CD+CK+  AAV+CR DSAFLC+ CD +IH      +RH+RVW+CEVCEQAPA V CKADAAALCV+CDADIHSANPLA RHERVPVE F
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

Q9SK53 Zinc finger protein CONSTANS-LIKE 31.7e-3676.4Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADAAALCVTCD DIHSANPL+RRHERVP+ PF
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

Arabidopsis top hitse value%identityAlignment
AT2G24790.1 CONSTANS-like 31.2e-3776.4Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADAAALCVTCD DIHSANPL+RRHERVP+ PF
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

AT2G24790.2 CONSTANS-like 31.2e-3776.4Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CDSCK+  A ++CR D+AFLC  CD KIH ANKL+SRH+RVW+CEVCEQAPA V CKADAAALCVTCD DIHSANPL+RRHERVP+ PF
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

AT5G15850.1 CONSTANS-like 13.4e-3263.64Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP
        CD+C++    VYCR DSA+LC +CDA++H AN+L+SRH+RV +C+ CE+APA   CKADAA+LC TCD++IHSANPLARRH+RVP+ P
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEP

AT5G24930.1 CONSTANS-like 42.4e-4183.15Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CDSCK+  AA+YCRPD+AFLCL+CD+K+H ANKL+SRH RVWMCEVCEQAPA V CKADAAALCVTCD DIHSANPLARRHERVPV PF
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF

AT5G57660.1 CONSTANS-like 58.1e-3473.03Show/hide
Query:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF
        CD+CK+  AAV+CR DSAFLC+ CD +IH      +RH+RVW+CEVCEQAPA V CKADAAALCV+CDADIHSANPLA RHERVPVE F
Subjt:  CDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCATGCGACTCCTGCAAGACCGGCCCGGCCGCGGTCTACTGTAGACCCGACTCCGCTTTTCTCTGCCTCACTTGCGACGCCAAAATCCACTGCGCCAATAAGCTCTCCTC
ACGCCACGACCGCGTCTGGATGTGCGAGGTTTGCGAACAGGCACCCGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGCGTCACCTGCGACGCCGATATTCACT
CCGCCAACCCACTAGCTCGCCGCCACGAGCGGGTCCCCGTCGAGCCTTTT
mRNA sequenceShow/hide mRNA sequence
CCATGCGACTCCTGCAAGACCGGCCCGGCCGCGGTCTACTGTAGACCCGACTCCGCTTTTCTCTGCCTCACTTGCGACGCCAAAATCCACTGCGCCAATAAGCTCTCCTC
ACGCCACGACCGCGTCTGGATGTGCGAGGTTTGCGAACAGGCACCCGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGCGTCACCTGCGACGCCGATATTCACT
CCGCCAACCCACTAGCTCGCCGCCACGAGCGGGTCCCCGTCGAGCCTTTT
Protein sequenceShow/hide protein sequence
PCDSCKTGPAAVYCRPDSAFLCLTCDAKIHCANKLSSRHDRVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPF