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MS002276 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002276
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationscaffold30:3779303..3782971
RNA-Seq ExpressionMS002276
SyntenyMS002276
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP57426.1 Small nuclear ribonucleoprotein E [Cajanus cajan]6.5e-3088.51Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

RZB71613.1 Small nuclear ribonucleoprotein E [Glycine soja]1.4e-2987.36Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKS+KTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

XP_003597961.1 small nuclear ribonucleoprotein E [Medicago truncatula]8.5e-3087.36Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

XP_020227736.1 small nuclear ribonucleoprotein E [Cajanus cajan]6.5e-3088.51Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

XP_022135003.1 small nuclear ribonucleoprotein E-like [Momordica charantia]5.0e-3089.66Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

TrEMBL top hitse value%identityAlignment
A0A151SRH5 Small nuclear ribonucleoprotein E3.1e-3088.51Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

A0A6J1C3K6 Small nuclear ribonucleoprotein E2.4e-3089.66Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

A0A6J1EQZ2 Small nuclear ribonucleoprotein E2.4e-3089.66Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

A0A6J1I7N4 Small nuclear ribonucleoprotein E2.4e-3089.66Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

G7IMA2 Small nuclear ribonucleoprotein E4.1e-3087.36Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQR+MTQPI  I     S KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E9.7e-2162.2Show/hide
Query:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG I+LKGDNITL+ +
Subjt:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E9.7e-2162.2Show/hide
Query:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG I+LKGDNITL+ +
Subjt:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E9.7e-2162.2Show/hide
Query:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG I+LKGDNITL+ +
Subjt:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E9.7e-2162.2Show/hide
Query:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG I+LKGDNITL+ +
Subjt:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E9.7e-2162.2Show/hide
Query:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        KVQ++M QPI  I  +  + ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG I+LKGDNITL+ +
Subjt:  KVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.8e-3081.61Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LG ILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein4.8e-2379.17Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLG

AT4G20440.1 small nuclear ribonucleoprotein associated protein B3.8e-0430.14Show/hide
Query:  SFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNIKKKSKKTLGMILLKGDNITLM
        +++ R+ I    Q   ++ G+ + FD +MNLVL D EE           +N +++ ++TLG++LL+G+ +  M
Subjt:  SFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VNIKKKSKKTLGMILLKGDNITLM

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.8e-3082.56Show/hide
Query:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN
        MASTKVQRIMTQPI  I     S KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKKK++K LG ILLKGDNITLMMN
Subjt:  MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMN

AT5G48870.1 Small nuclear ribonucleoprotein family protein1.7e-0435.59Show/hide
Query:  QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--LGMILLKGDNITLMM
        +IW+  + D  + G + GFD Y+N+VL+D  E  I  + ++   L  ILL G+NI +++
Subjt:  QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKT--LGMILLKGDNITLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATATCTATTCATCGTTCTTCCTTCAAAGCCCGTATTCAGATTTGGCTATTTGAGCAAAAGGA
CCTTAGGATCGAAGGTCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGA
TTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATATCTATTCATCGTTCTTCCTTCAAAGCCCGTATTCAGATTTGGCTATTTGAGCAAAAGGA
CCTTAGGATCGAAGGTCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGA
TTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACG
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPIVRISIHRSSFKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGMILLKGDNITLMMNT