CuGenDBv2

Gene ID	MS002293
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent RNA helicase
Genome location	scaffold30:3897259..3897610
RNA-Seq Expression	MS002293
Synteny	MS002293
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443803.1 PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo]

2.0e-21

62.24

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Query:  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAK++V+   GG     KK ++KR KKK IHKV+DYL+SD YLFAPL+ S  P N S  TP +GIE R R KDNRSLVKK +DYLKSDCYMYA L+ P
Subjt:  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

XP_022134857.1 uncharacterized protein LOC111007025 isoform X1 [Momordica charantia]

1.1e-43

98.94

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

XP_022134860.1 uncharacterized protein LOC111007025 isoform X2 [Momordica charantia]

1.1e-43

98.94

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

XP_022134861.1 uncharacterized protein LOC111007025 isoform X3 [Momordica charantia]

2.2e-39

97.73

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMY
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM+
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMY

XP_022134863.1 uncharacterized protein LOC111007025 isoform X4 [Momordica charantia]

1.1e-38

97.7

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCY+
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM

TrEMBL top hits

e value

%identity

Alignment

A0A5D3B7P7 Uncharacterized protein

9.9e-22

62.24

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Query:  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAK++V+   GG     KK ++KR KKK IHKV+DYL+SD YLFAPL+ S  P N S  TP +GIE R R KDNRSLVKK +DYLKSDCYMYA L+ P
Subjt:  MAKRIVN---GGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP-KGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

A0A6J1BYY8 uncharacterized protein LOC111007025 isoform X3

1.1e-39

97.73

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMY
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM+
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMY

A0A6J1BZI2 uncharacterized protein LOC111007025 isoform X2

5.4e-44

98.94

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

A0A6J1C0T7 uncharacterized protein LOC111007025 isoform X1

5.4e-44

98.94

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

A0A6J1C374 uncharacterized protein LOC111007025 isoform X4

5.2e-39

97.7

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Query:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM
        MAKRIVNGGATVTVKKTIMKRRKKK IHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCY+
Subjt:  MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G57790.1 unknown protein

1.1e-09

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Query:  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP---------------KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI
        +++  +K + +++ ++ +  +V YL SD+YLFAPL S+ PP      TP               +G E    E+    R + +K+++YLKSDCYMY+P+I
Subjt:  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP---------------KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI

AT5G57790.2 unknown protein

1.1e-09

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Query:  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP---------------KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI
        +++  +K + +++ ++ +  +V YL SD+YLFAPL S+ PP      TP               +G E    E+    R + +K+++YLKSDCYMY+P+I
Subjt:  ATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTP---------------KGIEFR--ERRKDNRSLVKKIEDYLKSDCYMYAPLI

Sequences

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CDS sequence

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ATGGCGAAGAGAATTGTGAATGGGGGTGCAACAGTAACAGTAAAGAAGACGATAATGAAGCGGAGGAAGAAGAAAGCGATTCACAAAGTGGTGGATTATCTGATTTCGGA
TTCTTACTTATTCGCTCCCCTGATTTCTTCTAATCCACCCTTCAATTATTCTCGCTCAACTCCAAAAGGGATCGAATTTCGAGAACGCAGAAAAGATAATCGGAGTTTGG
TGAAGAAGATTGAGGATTATTTGAAATCCGATTGCTACATGTACGCTCCTCTAATTTTCCCC

mRNA sequence

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Protein sequence

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MAKRIVNGGATVTVKKTIMKRRKKKAIHKVVDYLISDSYLFAPLISSNPPFNYSRSTPKGIEFRERRKDNRSLVKKIEDYLKSDCYMYAPLIFP

MS002293 (gene) of Bitter gourd (TR) v1 genome