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MS002299 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002299
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationscaffold30:3944753..3945187
RNA-Seq ExpressionMS002299
SyntenyMS002299
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146660.2 glycine-rich cell wall structural protein 2 [Cucumis sativus]4.0e-3281.7Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
        MA+I+  A+V  +L   +AI+SE RVARKDLGIDLGGVGVGLG GIGLG GGSGSGSG+G+GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS

Query:  RAGSGSGGNR--GSGSGSGYGGGSGRG-----SGEGYGEGHGYGEGHGYGGGN
        RAGSGSGGNR  GSG GSGYGGGSGRG     +GEGYGEGHGYGEG GYGGGN
Subjt:  RAGSGSGGNR--GSGSGSGYGGGSGRG-----SGEGYGEGHGYGEGHGYGGGN

XP_008443813.1 PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]4.0e-3281.58Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
        MA+I+  A+V  +L   +  +SE RVARKDLGIDLGG+GVGLGAGIGLG GGSGSGSG+G+GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS

Query:  RAGSGSGGNR--GSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN
        RAGSGSGGNR  GSG GSGYGGGSGR    G+GEGYGEGHGYGEGHGYGGGN
Subjt:  RAGSGSGGNR--GSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN

XP_022135238.1 putative glycine-rich cell wall structural protein 1 [Momordica charantia]5.2e-48100Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR
        MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR

Query:  AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN
        AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN
Subjt:  AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN

XP_038879748.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]1.7e-2778.52Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR
        MA+I+  AVV   L   +AI+SE RVARKDLGIDLGGVGVGLGAGIGLG G   GSG+G+GSGSGS SSSSS S SSSSSSGSGAGSEAGSYAGSYAGSR
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR

Query:  AGSGSGGNRGSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN
        AGSG   N GSGSG+GYGGGSGR    G GEGYGEGHGYGEGHGYGGGN
Subjt:  AGSGSGGNRGSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN

XP_038879815.1 putative per-hexamer repeat protein 5 [Benincasa hispida]2.8e-3079.19Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
        MA+IR   ++AF+LG+S  IVSE RVAR +LG+DLGGVG+G+G G+GLG GGSGSGSG+G+GSGSGSGSSS+SSS+SSSSSSGS AGSEAGSYAGSYAGS
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS

Query:  RAGSGSGGNR----GSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGG
        RAGSGSG NR    GSGSGSGYG GSGRGSGEGYGEGHGYGEGHGYG G
Subjt:  RAGSGSGGNR----GSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGG

TrEMBL top hitse value%identityAlignment
A0A0A0LTK9 Uncharacterized protein1.9e-3281.7Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
        MA+I+  A+V  +L   +AI+SE RVARKDLGIDLGGVGVGLG GIGLG GGSGSGSG+G+GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS

Query:  RAGSGSGGNR--GSGSGSGYGGGSGRG-----SGEGYGEGHGYGEGHGYGGGN
        RAGSGSGGNR  GSG GSGYGGGSGRG     +GEGYGEGHGYGEG GYGGGN
Subjt:  RAGSGSGGNR--GSGSGSGYGGGSGRG-----SGEGYGEGHGYGEGHGYGGGN

A0A1S3B9N0 glycine-rich cell wall structural protein 2-like1.9e-3281.58Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
        MA+I+  A+V  +L   +  +SE RVARKDLGIDLGG+GVGLGAGIGLG GGSGSGSG+G+GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGS

Query:  RAGSGSGGNR--GSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN
        RAGSGSGGNR  GSG GSGYGGGSGR    G+GEGYGEGHGYGEGHGYGGGN
Subjt:  RAGSGSGGNR--GSGSGSGYGGGSGR----GSGEGYGEGHGYGEGHGYGGGN

A0A6J1C497 putative glycine-rich cell wall structural protein 12.5e-48100Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR
        MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSR

Query:  AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN
        AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN
Subjt:  AGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN

A0A6J1E2L1 cell wall protein IFF6-like isoform X11.6e-2672.35Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSG--SSSSSSSYSSSSSSGSGAGSEAGSY-----
        MA+I    VV F+L  S  I+S+ARVARKDLG+DLGG+GVG+G GIGLG GGSGSGSG+G+GSGSGSG  SSSSSSSYSSSS SGSGAGSEAGSY     
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLG-GGSGSGSGAGAGSGSGSG--SSSSSSSYSSSSSSGSGAGSEAGSY-----

Query:  -----------AGSYAGSRAGSGSGGNR--GSGSGSGYGGGSGRGS----GEGYGEGHGYGEGHGYGGGN
                   AGSYAGSRAGSGSG NR  GSGSGSGYGGGSGRGS    GEGYGEGHGYGEG GYGGGN
Subjt:  -----------AGSYAGSRAGSGSGGNR--GSGSGSGYGGGSGRGS----GEGYGEGHGYGEGHGYGGGN

A0A7N2L1G7 Uncharacterized protein2.1e-2670.7Show/hide
Query:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGI--GLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAG
        MAA +   +VA ++ +S  +    RVARKDLG+DLGGVGVG+GAG+  GLGGGSGSG+GAG+GSGSGSGSSSSSSS SSS+SSGSG+GSEAGSYAGSYAG
Subjt:  MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGI--GLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAG

Query:  SRAGSGSGGN----------RGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN
        SRAGSGSGGN          +G GSGSG G GSG GSGEGYGEG+GYGEGHG GGG+
Subjt:  SRAGSGSGGN----------RGSGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN

SwissProt top hitse value%identityAlignment
P05790 Fibroin heavy chain6.2e-0457.41Show/hide
Query:  GVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYG
        G G G GAG+G G G+G+G GAGAGSG+GSG+ + S S  + + SGSGAGS AG+ +G+ AGS AG+GSG   GSG+G+G G G+G G+G GYG G+G G
Subjt:  GVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGGSGRGSGEGYGEGHGYG

Query:  EGHGYGGG
         G GYG G
Subjt:  EGHGYGGG

Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein2.3e-1772.73Show/hide
Query:  FILGL----SAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSG
        F+LGL    S  +++E+R+ARKDLGIDLGG+G+GLG G+G+G G GSGSGAGAGSGSGSGS SSSSS SSSSSS SG+G  AGS AGS+AGSRAGSGSG
Subjt:  FILGL----SAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSG

AT4G30460.1 glycine-rich protein8.3e-2068.03Show/hide
Query:  VVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSG-----AGSEAGSYAGSYAGSRAG-
        ++  IL  S  +VSE+RVARKDLG+DLGG+G G+G GIG+GGG GSGSGAGAGSGSG G SSSSSS SSSSSS SG     AGSEAGSYAGS+AGS +G 
Subjt:  VVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSG-----AGSEAGSYAGSYAGSRAG-

Query:  -SGSGGNRGSGSGSGY----GGGSGRGSGEGYGEGHGYGEGHGYGGG
         SGSG  RGSG G G+    GGG GRG G G G G GYGEG GYGGG
Subjt:  -SGSGGNRGSGSGSGY----GGGSGRGSGEGYGEGHGYGEGHGYGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGATCAGGTGTTTTGCAGTTGTGGCTTTTATACTTGGTTTGTCGGCTGCCATTGTGTCAGAAGCCCGCGTGGCGAGGAAGGACCTGGGGATCGACCTTGGAGG
AGTCGGAGTCGGGCTTGGAGCAGGAATAGGCTTAGGAGGCGGTAGTGGGTCAGGTTCCGGAGCCGGAGCAGGATCCGGATCCGGGTCCGGGTCGAGCTCCTCCTCATCAT
CGTACTCGTCAAGCTCAAGCTCTGGGTCCGGTGCGGGGTCCGAAGCCGGGTCGTACGCTGGCTCATACGCGGGGTCTCGGGCGGGCTCAGGGTCGGGTGGGAACAGAGGA
TCGGGGTCAGGTTCGGGGTATGGCGGAGGTTCGGGCAGAGGGAGCGGTGAAGGTTACGGAGAAGGCCATGGCTACGGCGAGGGACATGGTTATGGCGGAGGCAAC
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGATCAGGTGTTTTGCAGTTGTGGCTTTTATACTTGGTTTGTCGGCTGCCATTGTGTCAGAAGCCCGCGTGGCGAGGAAGGACCTGGGGATCGACCTTGGAGG
AGTCGGAGTCGGGCTTGGAGCAGGAATAGGCTTAGGAGGCGGTAGTGGGTCAGGTTCCGGAGCCGGAGCAGGATCCGGATCCGGGTCCGGGTCGAGCTCCTCCTCATCAT
CGTACTCGTCAAGCTCAAGCTCTGGGTCCGGTGCGGGGTCCGAAGCCGGGTCGTACGCTGGCTCATACGCGGGGTCTCGGGCGGGCTCAGGGTCGGGTGGGAACAGAGGA
TCGGGGTCAGGTTCGGGGTATGGCGGAGGTTCGGGCAGAGGGAGCGGTGAAGGTTACGGAGAAGGCCATGGCTACGGCGAGGGACATGGTTATGGCGGAGGCAAC
Protein sequenceShow/hide protein sequence
MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGAGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRG
SGSGSGYGGGSGRGSGEGYGEGHGYGEGHGYGGGN