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MS002300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationscaffold30:3949878..3950330
RNA-Seq ExpressionMS002300
SyntenyMS002300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589746.1 hypothetical protein SDJN03_15169, partial [Cucurbita argyrosperma subsp. sororia]3.4e-3474.85Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
        M SIRAIA +CFVVC  AIESQ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSG+G+GSGSGSGSGSY  SSS SSSSSYGGSGAGSEAGSYAGS AG
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG

Query:  S--GSGSGRNYRNGGS----GSGSGYGEGSGRGNGEGYGEG---------HGYGEGRGYG-----GEGGNN
        S  GS SGRNYRNGGS    GSG GYG G G G GEGYGEG          GYGEGRGYG     GEGGNN
Subjt:  S--GSGSGRNYRNGGS----GSGSGYGEGSGRGNGEGYGEG---------HGYGEGRGYG-----GEGGNN

XP_022135257.1 glycine-rich cell wall structural protein 2-like [Momordica charantia]4.1e-56100Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
        MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG

Query:  SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
Subjt:  SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

XP_022921885.1 glycine-rich protein DOT1-like [Cucurbita moschata]1.0e-3074.84Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSR
        M SIRAIA +CFVVC  AIESQ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSG+G+GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGS 
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSR

Query:  AGS--GSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        AGS  GS SGRNYRNGGS                GYGEG GYGEGRGY GEGGNN
Subjt:  AGS--GSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

XP_023515820.1 putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo]2.0e-3476.83Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
        M SIR+IA +CFVVC  AIESQ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSG+G+GSGSGSGSGSY  SSS SSSSSYGGSGAGSEAGSYAGS AG
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG

Query:  S--GSGSGRNYRNGGS--------GSGSGYGEGSGRGNG---EGYGEGHGYGEGRGYGGEGGNN
        S  GS SGRNYRNGGS        G G GYGEG G G G   EGYGEG GYGEGRGY GEGGNN
Subjt:  S--GSGSGRNYRNGGS--------GSGSGYGEGSGRGNG---EGYGEGHGYGEGRGYGGEGGNN

XP_038880102.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]7.8e-3175Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA
        MA+I+AIA +C V+C   IES A RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS A
Subjt:  MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA

Query:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        GS +GS                 GSGRGNG G GEGHGYGEGRGY GEGGNN
Subjt:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

TrEMBL top hitse value%identityAlignment
A0A0A0LW94 Uncharacterized protein2.4e-3073.68Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA
        MASI+AIA +C V+C   IES+A RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS A
Subjt:  MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA

Query:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        GS +GSG   RNG SG                 GEGHGYGEG GY GEGGNN
Subjt:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

A0A6J1C269 glycine-rich cell wall structural protein 2-like2.0e-56100Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
        MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAG

Query:  SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
Subjt:  SGSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

A0A6J1E2L1 cell wall protein IFF6-like isoform X12.7e-2970.24Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGG-GSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA
        MASI ++  VCF++ F  I SQARVARKDLGLDLGGLG+G+G GIGLG+GG GSGSG+G+GSGSGSGS S SSSSS+SSSS   GSGAGSEAGSYAGSRA
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGG-GSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA

Query:  GSGSGSGRN-----------------YRNGGSGSGSGYGEGSGRGN----GEGYGEGHGYGEGRGYGG
        GSGSGSG                    RNGGSGSGSGYG GSGRG+    GEGYGEGHGYGEGRGYGG
Subjt:  GSGSGSGRN-----------------YRNGGSGSGSGYGEGSGRGN----GEGYGEGHGYGEGRGYGG

A0A6J1E521 putative glycine-rich cell wall structural protein 1 isoform X35.4e-3076.82Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGG-GSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA
        MASI ++  VCF++ F  I SQARVARKDLGLDLGGLG+G+G GIGLG+GG GSGSG+G+GSGSGSGS S SSSSS+SSSS   GSGAGSEAGSYAGSRA
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGG-GSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRA

Query:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGN----GEGYGEGHGYGEGRGYGG
        GSGSG     RNGGSGSGSGYG GSGRG+    GEGYGEGHGYGEGRGYGG
Subjt:  GSGSGSGRNYRNGGSGSGSGYGEGSGRGN----GEGYGEGHGYGEGRGYGG

A0A6J1E720 glycine-rich protein DOT1-like4.9e-3174.84Show/hide
Query:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSR
        M SIRAIA +CFVVC  AIESQ RVARKDLGLDLGGLG+GLG G+GLG+GGGSGSG+G+GSGSGSGSGS S   SSS SSSSSYGGSGAGSEAGSYAGS 
Subjt:  MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSR

Query:  AGS--GSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN
        AGS  GS SGRNYRNGGS                GYGEG GYGEGRGY GEGGNN
Subjt:  AGS--GSGSGRNYRNGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein2.0e-1671.28Show/hide
Query:  VVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYG-GSGAGSEAGSYAGSRAGSGSGS
        V+    + +++R+ARKDLG+DLGG+GIGLG G+G+G+GGGSGSGAGAGSGSGSGS S SSSSS SSSSS G G  AGS AGS+AGSRAGSGSG+
Subjt:  VVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYG-GSGAGSEAGSYAGSRAGSGSGS

AT4G30460.1 glycine-rich protein7.3e-1962.91Show/hide
Query:  AIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSRAGSG-
        ++  +  ++    + S++RVARKDLGLDLGG+G G+G GIG+G GGGSGSGAGAGSGSG G  S SSSSS SSSSS GG G  AGSEAGSYAGS AGSG 
Subjt:  AIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSRAGSG-

Query:  ---SGSGRNYRNGGSGS-GSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGG
           SGSGR   +GG G  G G G G GRG G G G G GYGEG GYGG  G
Subjt:  ---SGSGRNYRNGGSGS-GSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATCAGGGCAATTGCTTTTGTTTGTTTCGTAGTCTGTTTCTGTGCGATTGAATCACAAGCACGAGTGGCGAGGAAGGACCTGGGCCTTGACCTTGGAGGCTT
GGGAATTGGGCTCGGGGCAGGAATCGGGTTGGGGATAGGCGGAGGCAGTGGCTCGGGTGCTGGAGCCGGGTCTGGATCCGGGTCCGGGTCGGGTTCGTATTCATCCTCGT
CATCACACTCGTCAAGCTCTAGCTACGGTGGCTCGGGTGCAGGCTCGGAAGCTGGTTCCTACGCAGGGTCACGTGCAGGGTCGGGTTCGGGTTCGGGAAGAAATTACAGG
AACGGTGGATCGGGATCTGGGTCGGGCTATGGCGAGGGTTCCGGTAGAGGAAACGGTGAAGGTTATGGTGAGGGTCATGGCTATGGCGAGGGACGTGGTTACGGCGGTGA
AGGCGGTAACAAT
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATCAGGGCAATTGCTTTTGTTTGTTTCGTAGTCTGTTTCTGTGCGATTGAATCACAAGCACGAGTGGCGAGGAAGGACCTGGGCCTTGACCTTGGAGGCTT
GGGAATTGGGCTCGGGGCAGGAATCGGGTTGGGGATAGGCGGAGGCAGTGGCTCGGGTGCTGGAGCCGGGTCTGGATCCGGGTCCGGGTCGGGTTCGTATTCATCCTCGT
CATCACACTCGTCAAGCTCTAGCTACGGTGGCTCGGGTGCAGGCTCGGAAGCTGGTTCCTACGCAGGGTCACGTGCAGGGTCGGGTTCGGGTTCGGGAAGAAATTACAGG
AACGGTGGATCGGGATCTGGGTCGGGCTATGGCGAGGGTTCCGGTAGAGGAAACGGTGAAGGTTATGGTGAGGGTCATGGCTATGGCGAGGGACGTGGTTACGGCGGTGA
AGGCGGTAACAAT
Protein sequenceShow/hide protein sequence
MASIRAIAFVCFVVCFCAIESQARVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYR
NGGSGSGSGYGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN