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MS002301 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002301
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich cell wall structural protein 2-like
Genome locationscaffold30:3952250..3952624
RNA-Seq ExpressionMS002301
SyntenyMS002301
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146662.1 glycine-rich cell wall structural protein 2 [Cucumis sativus]2.0e-2484.13Show/hide
Query:  TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--
        + KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSGSGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  
Subjt:  TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--

Query:  GSGGRGGGGAGYGGGYGSGGGQGHAK
        GSGGRGG G+GYGGGYGSG G GH K
Subjt:  GSGGRGGGGAGYGGGYGSGGGQGHAK
XP_022135308.1 glycine-rich protein 5-like [Momordica charantia]8.7e-3699.2Show/hide
Query:  TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG
        TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG
Subjt:  TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG

Query:  SGGRGGGGAGYGGGYGSGGGQGHAK
        SGGRGGG AGYGGGYGSGGGQGHAK
Subjt:  SGGRGGGGAGYGGGYGSGGGQGHAK
XP_022921886.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]4.0e-2584.8Show/hide
Query:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G
        ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG  SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  G
Subjt:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G

Query:  SGGRGGGGAGYGGGYGSGGGQGHAK
        SGGRGGGG+GYGGGYGSG G GH K
Subjt:  SGGRGGGGAGYGGGYGSGGGQGHAK
XP_022988598.1 glycine-rich cell wall structural protein 2-like [Cucurbita maxima]5.8e-2484.55Show/hide
Query:  KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSG
        KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG  SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  GSG
Subjt:  KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSG

Query:  GRGGGGAGYGGGYGSGGGQGHAK
        G GGGG+GYGGGYGSG G GH K
Subjt:  GRGGGGAGYGGGYGSGGGQGHAK
XP_023515822.1 counting factor 45-1-like [Cucurbita pepo subsp. pepo]3.4e-2484Show/hide
Query:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G
        ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGS    GSGSGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  G
Subjt:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G

Query:  SGGRGGGGAGYGGGYGSGGGQGHAK
        SGGRGGGG+GYGGGYGSG G GH K
Subjt:  SGGRGGGGAGYGGGYGSGGGQGHAK
TrEMBL top hitse value%identityAlignment
A0A0A0LWP0 Uncharacterized protein9.7e-2584.13Show/hide
Query:  TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--
        + KS +LAALLV SL VV+S+SRVARKDLGLDLGG+G+G+GAGVGIGLGGSGSGAG+GSGSGS SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  
Subjt:  TFKSSLLAALLVISL-VVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--

Query:  GSGGRGGGGAGYGGGYGSGGGQGHAK
        GSGGRGG G+GYGGGYGSG G GH K
Subjt:  GSGGRGGGGAGYGGGYGSGGGQGHAK
A0A5A7T0K2 Glycine-rich cell wall structural protein 2-like6.5e-2177.95Show/hide
Query:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG
        + KS +LAALLV S  V S+SRVARKDLGLDLGG+G+G+G G+GIGLGGSGSG+G+GSGSG  S SSSSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSG
Subjt:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG

Query:  --GRG--GGGAGYGGGYGSGGGQGHAK
          GRG  GGG+GYGGGYGSG G GH K
Subjt:  --GRG--GGGAGYGGGYGSGGGQGHAK
A0A6J1C4G6 glycine-rich protein 5-like4.2e-3699.2Show/hide
Query:  TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG
        TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG
Subjt:  TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAG

Query:  SGGRGGGGAGYGGGYGSGGGQGHAK
        SGGRGGG AGYGGGYGSGGGQGHAK
Subjt:  SGGRGGGGAGYGGGYGSGGGQGHAK
A0A6J1E2L6 glycine-rich cell wall structural protein 2-like2.0e-2584.8Show/hide
Query:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G
        ++KS LLAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG  SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  G
Subjt:  TFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--G

Query:  SGGRGGGGAGYGGGYGSGGGQGHAK
        SGGRGGGG+GYGGGYGSG G GH K
Subjt:  SGGRGGGGAGYGGGYGSGGGQGHAK
A0A6J1JMR8 glycine-rich cell wall structural protein 2-like2.8e-2484.55Show/hide
Query:  KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSG
        KS +LAA+LV SL+V SESRVARKDLGLDLGG+GVGIGAG+GIGLGGSGSG+G+GSGSG  SSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA  GSG
Subjt:  KSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRA--GSG

Query:  GRGGGGAGYGGGYGSGGGQGHAK
        G GGGG+GYGGGYGSG G GH K
Subjt:  GRGGGGAGYGGGYGSGGGQGHAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30450.1 glycine-rich protein3.3e-1776.04Show/hide
Query:  LLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGL-GGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG
        LL  +++ SLV+ +ESR+ARKDLG+DLGGIG+G+G G+GIGL GGSGSGAGAGSGSGS S SSSSSSSSSSSSSSGSG  +GS AGS+AGSRAGSG
Subjt:  LLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGL-GGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG
AT4G30460.1 glycine-rich protein3.3e-1770.31Show/hide
Query:  SSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS-GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--
        S +L  L++ + V+ SESRVARKDLGLDLGGIG GIG G+GIG GGSGSGAGAGSGS G  SSSSSSSSSSSSSSS G G D+GSEAGSYAGS AGSG  
Subjt:  SSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGS-GSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSG--

Query:  -------GRG-GGGAGYGGGYGSGGGQG
               GRG GGG G+GGG G GGG+G
Subjt:  -------GRG-GGGAGYGGGYGSGGGQG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCAT
CGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCTAGTTCGAGTTCGAGTT
CGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAGGCGCTGGA
TACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAA
mRNA sequenceShow/hide mRNA sequence
ACTGCTACTTTTAAATCCTCCCTTCTTGCTGCTCTGCTCGTTATTTCTCTTGTTGTGGCGTCCGAGAGCCGAGTGGCAAGGAAAGACCTGGGCCTTGACCTGGGTGGCAT
CGGGGTTGGGATCGGGGCTGGAGTAGGCATTGGACTTGGTGGCAGTGGTTCCGGCGCGGGTGCTGGCTCTGGCTCTGGCTCAAGTTCCAGTTCTAGTTCGAGTTCGAGTT
CGAGTTCATCTTCATCTTCTTCTGGGTCGGGTTCTGATTCCGGGTCTGAAGCGGGCTCGTATGCTGGGTCTAGAGCAGGATCGGGTGGTCGCGGAGGTGGAGGCGCTGGA
TACGGTGGCGGCTACGGATCCGGAGGCGGACAAGGCCATGCAAAA
Protein sequenceShow/hide protein sequence
TATFKSSLLAALLVISLVVASESRVARKDLGLDLGGIGVGIGAGVGIGLGGSGSGAGAGSGSGSSSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGGRGGGGAG
YGGGYGSGGGQGHAK