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MS002312 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002312
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold30:4046481..4046940
RNA-Seq ExpressionMS002312
SyntenyMS002312
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]1.1e-3569.84Show/hide
Query:  IAMADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL
        +AM DS+FIF G S V   L N NN R F    AKRT   DS +  S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLL
Subjt:  IAMADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL

Query:  KIGAFLVVPFCVFLISSFAK-QTDSS
        KIGA LVVPFCVFL+ SF+K  +DSS
Subjt:  KIGAFLVVPFCVFLISSFAK-QTDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]4.5e-3770.87Show/hide
Query:  IAMADSTFIFSGPSAVSRSLFN---INNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        +AM DS+FIF G SAV   L N    NN R F    AKRT DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+L
Subjt:  IAMADSTFIFSGPSAVSRSLFN---INNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLISSFAK-QTDSS
        LKIGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  LKIGAFLVVPFCVFLISSFAK-QTDSS

XP_022135305.1 uncharacterized protein LOC111007301 [Momordica charantia]4.2e-5999.17Show/hide
Query:  MADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
        MADSTFIFSGPSAVSRSLFN+NNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
Subjt:  MADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA

Query:  FLVVPFCVFLISSFAKQTDSS
        FLVVPFCVFLISSFAKQTDSS
Subjt:  FLVVPFCVFLISSFAKQTDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]5.5e-3570.49Show/hide
Query:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+    L + NN R F T  AKRT DS +  S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]2.5e-3571.31Show/hide
Query:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADSTFIF+G SA+    L + NN R F T  AKRT DS  + S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein5.4e-3669.84Show/hide
Query:  IAMADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL
        +AM DS+FIF G S V   L N NN R F    AKRT   DS +  S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLL
Subjt:  IAMADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLL

Query:  KIGAFLVVPFCVFLISSFAK-QTDSS
        KIGA LVVPFCVFL+ SF+K  +DSS
Subjt:  KIGAFLVVPFCVFLISSFAK-QTDSS

A0A1S3B903 uncharacterized protein LOC1034873292.2e-3770.87Show/hide
Query:  IAMADSTFIFSGPSAVSRSLFN---INNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDL
        +AM DS+FIF G SAV   L N    NN R F    AKRT DS +T S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+L
Subjt:  IAMADSTFIFSGPSAVSRSLFN---INNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCVFLISSFAK-QTDSS
        LKIGAFLVVPFCVFL+ SF+K  +DSS
Subjt:  LKIGAFLVVPFCVFLISSFAK-QTDSS

A0A6J1C0R6 uncharacterized protein LOC1110073012.0e-5999.17Show/hide
Query:  MADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
        MADSTFIFSGPSAVSRSLFN+NNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA
Subjt:  MADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGA

Query:  FLVVPFCVFLISSFAKQTDSS
        FLVVPFCVFLISSFAKQTDSS
Subjt:  FLVVPFCVFLISSFAKQTDSS

A0A6J1EZT4 uncharacterized protein LOC1114408612.7e-3570.49Show/hide
Query:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+    L + NN R F T  AKRT DS +  S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  MADSTFIFSGPSAVSRS-LFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

A0A6J1KT82 uncharacterized protein LOC1114980167.8e-3569.67Show/hide
Query:  MADSTFIFSGPSAVSRSL-FNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG
        +ADS+FIF+G SA+   L  + NN R F T  AKRT DS +  S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIG
Subjt:  MADSTFIFSGPSAVSRSL-FNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIG

Query:  AFLVVPFCVFLISSFAKQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLISSFAKQTDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein9.8e-2253.92Show/hide
Query:  NINNRRNFR---TALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK
        N N  R+F    T ++KR D S   KSN+E       ++VPN +VAR  ++VL LGF+DAGYSGDWSRIG I+KE+E+LLKI AFLVVP C+FL  SF+ 
Subjt:  NINNRRNFR---TALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK

Query:  QT
         +
Subjt:  QT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGCGATGGCAGATTCCACCTTTATCTTCTCCGGTCCTTCCGCCGTATCTCGCTCCCTTTTCAACATCAACAATCGCAGAAATTTTCGAACCGCATTGGCAAAACGAAC
CGACGATTCCACCGCCACTAAATCGAATCAAGAAAATCAATTCGAGTTTCCGTCGCTGAGAGTTCCAAATCCACTTGTCGCTCGATTTGTCGTTTCGGTTCTCGGATTAG
GGTTCGTCGATGCAGGGTACAGTGGAGACTGGTCTAGAATTGGAGCAATAACTAAAGAGAGCGAAGATTTGCTGAAGATTGGAGCTTTCTTAGTGGTTCCGTTTTGCGTA
TTTCTGATATCTTCTTTTGCCAAACAGACGGATTCTTCG
mRNA sequenceShow/hide mRNA sequence
ATAGCGATGGCAGATTCCACCTTTATCTTCTCCGGTCCTTCCGCCGTATCTCGCTCCCTTTTCAACATCAACAATCGCAGAAATTTTCGAACCGCATTGGCAAAACGAAC
CGACGATTCCACCGCCACTAAATCGAATCAAGAAAATCAATTCGAGTTTCCGTCGCTGAGAGTTCCAAATCCACTTGTCGCTCGATTTGTCGTTTCGGTTCTCGGATTAG
GGTTCGTCGATGCAGGGTACAGTGGAGACTGGTCTAGAATTGGAGCAATAACTAAAGAGAGCGAAGATTTGCTGAAGATTGGAGCTTTCTTAGTGGTTCCGTTTTGCGTA
TTTCTGATATCTTCTTTTGCCAAACAGACGGATTCTTCG
Protein sequenceShow/hide protein sequence
IAMADSTFIFSGPSAVSRSLFNINNRRNFRTALAKRTDDSTATKSNQENQFEFPSLRVPNPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCV
FLISSFAKQTDSS