; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002313 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002313
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L35
Genome locationscaffold30:4050266..4052721
RNA-Seq ExpressionMS002313
SyntenyMS002313
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589755.1 50S ribosomal protein L35, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-6288.16Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS T SFGL FSPLCSR SVRVS  SVRL SS NK  SLRL SS NIS FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

KAG7023426.1 50S ribosomal protein L35, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.3e-6288.82Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS T SFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS NIS FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_008443834.1 PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]3.3e-6185.53Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS RVSH SV LA SFNKVNSL+L SS NISGFG+  LQK  HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022135558.1 50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]5.2e-75100Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022988597.1 50S ribosomal protein L35, chloroplastic-like [Cucurbita maxima]2.9e-6288.16Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS +VSFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS N+S FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

TrEMBL top hitse value%identityAlignment
A0A1S3B9R8 50S ribosomal protein L351.6e-6185.53Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS RVSH SV LA SFNKVNSL+L SS NISGFG+  LQK  HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1C550 50S ribosomal protein L352.5e-75100Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1E327 50S ribosomal protein L352.1e-6187.5Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS T SFGLRF PLCSR SV VS  SVRL SS NK  SLRL SS NIS FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1EZN8 50S ribosomal protein L351.7e-6086.84Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAST   FGLRF+PLCSRPS  VS  S+RLA SFNK NSLRL SS NISG GVALLQKS  IAP  QV TPLTVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1JDG6 50S ribosomal protein L351.4e-6288.16Show/hide
Query:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG
        MASAS +VSFGLRFSPLCSR SVRVS  SVRL SS NK  SLRL SS N+S FGVALLQK FHIAP+S++HTP TVVAAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

SwissProt top hitse value%identityAlignment
B2J0D1 50S ribosomal protein L355.1e-0957.14Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ +K  +SK   V   D  NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

P23326 50S ribosomal protein L35, chloroplastic5.6e-3260Show/hide
Query:  MASASTTVSF---GLRFSPLCSRPSVRVSHGSVRLASSFNK--VNSLRLGSSPNISGFGV-ALLQKSFHIAPT-SQVHT---PLTVVAAKGYKMKTHKAS
        MASA+ T+SF    L  SP    PS R S       + FNK   ++L L SS +IS   V  ++ K+  I+   S V T     TV AAKGYKMKTHKAS
Subjt:  MASASTTVSF---GLRFSPLCSRPSVRVSHGSVRLASSFNK--VNSLRLGSSPNISGFGV-ALLQKSFHIAPT-SQVHT---PLTVVAAKGYKMKTHKAS

Query:  AKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ
        AKRFRVTG+GKIVRRRAGKQHLL KKNTKRK RLSK+  V RSDYDNVIGALPYLKVNR+
Subjt:  AKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQ

Q3M7I2 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Q8VZ55 50S ribosomal protein L35, chloroplastic1.5e-3266.92Show/hide
Query:  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
        +R S   V L SS +   S  L SS +ISG    L L+ S   +P SQ     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KRK
Subjt:  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK

Query:  LRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  LRLSKMHPVSRSDYDNVIGALPYLKVNRQA

Q8YRL9 50S ribosomal protein L354.6e-1058.73Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L351.1e-3366.92Show/hide
Query:  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK
        +R S   V L SS +   S  L SS +ISG    L L+ S   +P SQ     TV A KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN KRK
Subjt:  VRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVAL-LQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRK

Query:  LRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  LRLSKMHPVSRSDYDNVIGALPYLKVNRQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTGCTTCGACGACAGTGTCCTTTGGCCTTAGATTTTCCCCATTGTGCTCTCGCCCATCAGTTCGCGTCTCTCATGGTTCCGTCCGGCTCGCTTCGTCGTTCAA
CAAGGTGAACTCCTTGAGGCTTGGTTCTTCCCCCAACATTTCCGGGTTCGGAGTCGCTCTCCTTCAGAAGTCATTTCATATTGCTCCCACCTCTCAAGTGCATACTCCTC
TCACTGTTGTCGCTGCTAAAGGCTATAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGAGTGACGGGTCGCGGGAAGATCGTTCGGAGGAGAGCTGGAAAGCAG
CATTTGCTGTACAAGAAGAATACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTATGATAATGTGATTGGTGCTTTGCCATACCTGAAGGT
GAATAGGCAGGCCAAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTGCTTCGACGACAGTGTCCTTTGGCCTTAGATTTTCCCCATTGTGCTCTCGCCCATCAGTTCGCGTCTCTCATGGTTCCGTCCGGCTCGCTTCGTCGTTCAA
CAAGGTGAACTCCTTGAGGCTTGGTTCTTCCCCCAACATTTCCGGGTTCGGAGTCGCTCTCCTTCAGAAGTCATTTCATATTGCTCCCACCTCTCAAGTGCATACTCCTC
TCACTGTTGTCGCTGCTAAAGGCTATAAAATGAAAACCCACAAGGCTTCGGCCAAGCGATTCAGAGTGACGGGTCGCGGGAAGATCGTTCGGAGGAGAGCTGGAAAGCAG
CATTTGCTGTACAAGAAGAATACAAAGAGGAAATTACGGCTTTCCAAAATGCACCCAGTGAGCCGAAGTGACTATGATAATGTGATTGGTGCTTTGCCATACCTGAAGGT
GAATAGGCAGGCCAAA
Protein sequenceShow/hide protein sequence
MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQKSFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ
HLLYKKNTKRKLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK