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MS002323 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002323
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
Genome locationscaffold30:4150853..4151164
RNA-Seq ExpressionMS002323
SyntenyMS002323
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035100.1 hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa]2.4e-0746.73Show/hide
Query:  MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSL
        MAA+  F + +ALI+LLLFSESL A+SS D+G +SN                RR D    ++LA KI  KRGVRS V AGR++ S S++     F+ GSL
Subjt:  MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSL

Query:  LCFCIAF
        +CF IAF
Subjt:  LCFCIAF

KAG6575858.1 hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia]5.4e-0743.4Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG
        MA +K  +SIAL+ALLL SE L +S+AD+G   +   G+ RR+ L  + R + A+N +G   + +  I+R  R AV   RA G SPS    SR   F  G
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG

Query:  SLLCFC
        SLLC C
Subjt:  SLLCFC

KAG6575859.1 hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia]1.8e-1048.48Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEK--ISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLL
        MAA+K  VS+AL+ALLLFSESL  S+ D   DSNS TG+LRRN+L  +  + ADNSV S+   K  + IKR +R      R+S +  SR      GS+L
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEK--ISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLL

KAG6587814.1 hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2160.58Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCFC
        MA +K    I LI LLL SES  VSSADY  D  S TGIL RN+LHP   +R D   GS+LAEKISIKRG RSAVI G +S S SSR PPF+  S++CF 
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCFC

Query:  IAFA
         AFA
Subjt:  IAFA

KGN65176.1 hypothetical protein Csa_019975 [Cucumis sativus]7.5e-0949.53Show/hide
Query:  AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSL
        AA+  F + IALI+LLLFSESL A+SS+D+  DSN                R  D   G++L EKISIKRGVRS VIAGR++ S S+R      F+ GS+
Subjt:  AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSL

Query:  LCFCIAF
        +CF IAF
Subjt:  LCFCIAF

TrEMBL top hitse value%identityAlignment
A0A0A0LYV9 Uncharacterized protein3.6e-0949.53Show/hide
Query:  AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSL
        AA+  F + IALI+LLLFSESL A+SS+D+  DSN                R  D   G++L EKISIKRGVRS VIAGR++ S S+R      F+ GS+
Subjt:  AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSL

Query:  LCFCIAF
        +CF IAF
Subjt:  LCFCIAF

A0A5D3BCG4 Uncharacterized protein1.2e-0746.73Show/hide
Query:  MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSL
        MAA+  F + +ALI+LLLFSESL A+SS D+G +SN                RR D    ++LA KI  KRGVRS V AGR++ S S++     F+ GSL
Subjt:  MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSL

Query:  LCFCIAF
        +CF IAF
Subjt:  LCFCIAF

A0A5D3D3Y6 E3 ubiquitin-protein ligase MIEL1-like4.9e-0640.54Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEK-----ISIKRGVRSAVIAG-----RASGSPSSRAPP
        MAA++P VSIAL+ALL FSESL          S+S TGI  RN+LH    R  + SV S+   K        +R +R  +I+G       S    SR   
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEK-----ISIKRGVRSAVIAG-----RASGSPSSRAPP

Query:  FHFGSLLCFCI
        F  GS+LC CI
Subjt:  FHFGSLLCFCI

A0A6J1GRX2 uncharacterized protein LOC1114564662.2e-0641.28Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG
        MA +K  +SIAL+ALLL SE L +S+AD+G   +    + RR+ L  + R + A+N +G   + +  I+R  R AV   RA G SPS    S+   F  G
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG

Query:  SLLCFCIAF
        SLLC C  F
Subjt:  SLLCFCIAF

A0A6J1JZB1 uncharacterized protein LOC111488793 isoform X11.3e-0641.28Show/hide
Query:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG
        MA +K  +SIAL+ALLL  E L +S+AD+G   +   G+ R + L  + R + A+N +G+  + +  I+R  R AV   RA G SPS    SR   F  G
Subjt:  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-ADNSVGSNLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFG

Query:  SLLCFCIAF
        SLLC C  F
Subjt:  SLLCFCIAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTGATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCAC
CGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGCAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCG
CCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTCTGCATCGCCTTTGCG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTGATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCAC
CGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGCAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCG
CCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTCTGCATCGCCTTTGCG
Protein sequenceShow/hide protein sequence
MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRRADNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCFCIAFA