; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002326 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002326
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUBP1-associated proteins 1C-like isoform X3
Genome locationscaffold30:4162507..4163809
RNA-Seq ExpressionMS002326
SyntenyMS002326
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7838133.1 UBP1-associated proteins 1C-like isoform X2 [Senna tora]6.5e-1631.39Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQ-----FSMKSS--------GQRMLNQSNS-------SPLRFLEPP---------K
        +++ +I   E++ RR +E E+RRE+++E+E+A+ R  E  L  E+     FS + +        G R L + N+         +  + PP         K
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQ-----FSMKSS--------GQRMLNQSNS-------SPLRFLEPP---------K

Query:  EATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEK
               KDK I+LA+P+P  +EAKRKA  PP      AV  E + P G ++ K K++    + C  C+++ + +  F+ HL+GKKH+AK  A +  ++K
Subjt:  EATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEK

Query:  ITVTPVEEEEEEEELEEIKPGPEI--------------ENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRL
        I +    E   EE L +  P                  + K  FKFWCE CQ+G  +  VME+H  GKKH  R+
Subjt:  ITVTPVEEEEEEEELEEIKPGPEI--------------ENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRL

KAG5243743.1 zinc finger RNA-binding protein [Salix suchowensis]8.5e-1628.7Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML-----NQSNS-------------------------SPLRFL-EP
        R++EEI  +EMAWRR +EVE+RRE+++E+E+A+L     + ++     ++S Q +L     NQ +S                         S ++ L EP
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML-----NQSNS-------------------------SPLRFL-EP

Query:  PKEATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------
          + + +  KDK I+L +P+P    AKRKA+ P T      VG   + PF  I KK K++    + C  C+++ +S+     HL+G++H+A         
Subjt:  PKEATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------

Query:  -------------KSEASKKVVEKITVTPVEEEEEEEELEEIKPG---------------------------------------------PEIENKGFFK
                     K+  + K+    T   +E E E+E L+  K                                               PEI+ K  FK
Subjt:  -------------KSEASKKVVEKITVTPVEEEEEEEELEEIKPG---------------------------------------------PEIENKGFFK

Query:  FWCEICQIGTQSMIVMENHNMGKKHKTRLLK
        FWCE+CQIG  S +VME HN GKKH   L K
Subjt:  FWCEICQIGTQSMIVMENHNMGKKHKTRLLK

XP_008443847.1 PREDICTED: uncharacterized protein LOC103487343 [Cucumis melo]2.2e-2437.93Show/hide
Query:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL
        +R+KEEI +RE+  RR +E EIRRE+++E+ELAI RA  +T      D QF    M     R+L+ S+S+ L  +     + N +E+ KP        I 
Subjt:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL

Query:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE
        L RP+P +F  KRKA+     A A   G E        P  WI   +KK  ++ F C  C +  +S+ SF+AH+ GKKH+AK E  ++V +     P + 
Subjt:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE

Query:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA
        EE+ +E     ++ I   P +E     KF CEIC +G   M VM +HN G+KHK RLLKL+
Subjt:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA

XP_024459786.1 uncharacterized protein LOC18109302 [Populus trichocarpa]8.5e-1627.78Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN
        R++EEI  +EMAWRR++E E+RRE+++E+E+A +R       +E+ +M+   ++ L      NQ + S            + ++ PP         + + 
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN

Query:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSE------------
        +  KDK I+L +P+P    AKRKA+ P  E+  E        PF  I KK K++    + C  C+++ +S+   + HL+G++H+AK              
Subjt:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSE------------

Query:  ----------------------------------------ASKKV---VEKITVTPVEEEEEEEELEEIKPG-----------PEIENKGFFKFWCEICQ
                                                ++KK+    E+     V+ E++ ++LE++              PEI+ K  FKFWCE+CQ
Subjt:  ----------------------------------------ASKKV---VEKITVTPVEEEEEEEELEEIKPG-----------PEIENKGFFKFWCEICQ

Query:  IGTQSMIVMENHNMGKKHKTRLLK
        IG  S +VME H  GKKH  RL K
Subjt:  IGTQSMIVMENHNMGKKHKTRLLK

XP_038880353.1 zinc finger protein 385B [Benincasa hispida]3.4e-3341.47Show/hide
Query:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERT---LDDEQFSMKSSGQRMLNQ--------------SNSSPLRFLEPPKEATN-----DE
        +R+K+EI IRE+A RR +E EIRRE+I+EQELA  R   RT   L D+QFS++   Q  +N               S+SSPL     P          D+
Subjt:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERT---LDDEQFSMKSSGQRMLNQ--------------SNSSPLRFLEPPKEATN-----DE

Query:  EKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPV
        +K+K I+L +P+P +FE KRKA     E EA  V T+ K P  WI   +KK  ++ F C  C +  +S+ SF+AHL+GKKH AK   S +  E      +
Subjt:  EKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPV

Query:  EEEEEEEELEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA
        +E+ + ++ +  K    ++NK  FKFWC+IC+IGT  M +M +HN GKKHK RLLKL+
Subjt:  EEEEEEEELEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA

TrEMBL top hitse value%identityAlignment
A0A1S3B9S7 uncharacterized protein LOC1034873431.1e-2437.93Show/hide
Query:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL
        +R+KEEI +RE+  RR +E EIRRE+++E+ELAI RA  +T      D QF    M     R+L+ S+S+ L  +     + N +E+ KP        I 
Subjt:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL

Query:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE
        L RP+P +F  KRKA+     A A   G E        P  WI   +KK  ++ F C  C +  +S+ SF+AH+ GKKH+AK E  ++V +     P + 
Subjt:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE

Query:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA
        EE+ +E     ++ I   P +E     KF CEIC +G   M VM +HN G+KHK RLLKL+
Subjt:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA

A0A3N7F770 Uncharacterized protein4.1e-1627.78Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN
        R++EEI  +EMAWRR++E E+RRE+++E+E+A +R       +E+ +M+   ++ L      NQ + S            + ++ PP         + + 
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN

Query:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSE------------
        +  KDK I+L +P+P    AKRKA+ P  E+  E        PF  I KK K++    + C  C+++ +S+   + HL+G++H+AK              
Subjt:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSE------------

Query:  ----------------------------------------ASKKV---VEKITVTPVEEEEEEEELEEIKPG-----------PEIENKGFFKFWCEICQ
                                                ++KK+    E+     V+ E++ ++LE++              PEI+ K  FKFWCE+CQ
Subjt:  ----------------------------------------ASKKV---VEKITVTPVEEEEEEEELEEIKPG-----------PEIENKGFFKFWCEICQ

Query:  IGTQSMIVMENHNMGKKHKTRLLK
        IG  S +VME H  GKKH  RL K
Subjt:  IGTQSMIVMENHNMGKKHKTRLLK

A0A5D3B800 UBP1-associated proteins 1C-like isoform X31.1e-2437.93Show/hide
Query:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL
        +R+KEEI +RE+  RR +E EIRRE+++E+ELAI RA  +T      D QF    M     R+L+ S+S+ L  +     + N +E+ KP        I 
Subjt:  RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLD----DEQF---SMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKP--------IL

Query:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE
        L RP+P +F  KRKA+     A A   G E        P  WI   +KK  ++ F C  C +  +S+ SF+AH+ GKKH+AK E  ++V +     P + 
Subjt:  LARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKP-----PFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEE

Query:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA
        EE+ +E     ++ I   P +E     KF CEIC +G   M VM +HN G+KHK RLLKL+
Subjt:  EEEEEE-----LEEIKPGPEIENKGFFKFWCEICQIGTQSMIVMENHNMGKKHKTRLLKLA

A0A6M2ER95 Uncharacterized protein2.7e-1528.09Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN
        R++EEI  +EMAWRR++E E+RRE+++E+E+A +R   R   +E+ +M+   ++ L      NQ + S            + ++ PP         + + 
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML------NQSNSS-----------PLRFLEPP--------KEATN

Query:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------------
        +  KDK I+L +P+P    AKRKA+ P  E   E        PF  I KK K++    + C  C+++ +S+   + HL+G++H+A               
Subjt:  DEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------------

Query:  KSEASKKVVEKITVT----------------------------PVEEEEE------------EEELEEIKPG-----------PEIENKGFFKFWCEICQ
        K+   K+  +   VT                             +E +EE             ++LE +               EI+ K  FKFWCE+CQ
Subjt:  KSEASKKVVEKITVT----------------------------PVEEEEE------------EEELEEIKPG-----------PEIENKGFFKFWCEICQ

Query:  IGTQSMIVMENHNMGKKHKTRLLK
        IG  S +VME H  GKKH  RL K
Subjt:  IGTQSMIVMENHNMGKKHKTRLLK

A0A6N2MQQ7 Uncharacterized protein4.8e-1729.09Show/hide
Query:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML-----NQSNS-------------------------SPLRFL-EP
        R++EEI  +EMAWRR +EVE+RRE+++E+E+A+L     + ++     ++S Q +L     NQ +S                         S ++ L EP
Subjt:  RVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRML-----NQSNS-------------------------SPLRFL-EP

Query:  PKEATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------
          + + +  KDK I+L +P+P    AKRKA+ P T      VG   + PF  I KK K++    + C  C+++ +S+     HL+G++H+A         
Subjt:  PKEATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAEAVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQA---------

Query:  ------------KSEASKKVVEKITVTPVEEEEEEEELEEIKPG---------------------------------------------PEIENKGFFKF
                    K+  + K+    T   +E E E+E L+  K                                               PEI+ K  FKF
Subjt:  ------------KSEASKKVVEKITVTPVEEEEEEEELEEIKPG---------------------------------------------PEIENKGFFKF

Query:  WCEICQIGTQSMIVMENHNMGKKHKTRLLK
        WCE+CQIG  S +VME HN GKKH  RL K
Subjt:  WCEICQIGTQSMIVMENHNMGKKHKTRLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24030.2 zinc ion binding;nucleic acid binding2.9e-0666.67Show/hide
Query:  KFWCEICQIGTQSMIVMENHNMGKKHK
        KFWCEIC++GT   IVM +H +GKKHK
Subjt:  KFWCEICQIGTQSMIVMENHNMGKKHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGGCGGGTTAAAGAAGAGATAAGGATTAGAGAGATGGCTTGGCGGCGGAAGGTGGAGGTGGAGATTAGGAGGGAAATAATCATGGAGCAAGAACTAGCCATTCTTAGGGC
TGCTGAACGAACCCTAGATGATGAACAATTTTCCATGAAATCGAGTGGACAAAGAATGCTTAATCAGTCGAATTCGTCGCCACTTCGATTTCTGGAACCCCCAAAAGAGG
CTACGAATGATGAGGAAAAGGACAAGCCAATCCTTCTGGCAAGGCCAAACCCACAACGATTCGAAGCCAAGCGGAAAGCCATGAGACCACCTACAGAAGCCGAGGCAGAG
GCTGTCGGTACCGAACCCAAGCCGCCATTTGGCTGGATTTTGAAGAAAGCCAAGAAAGATGAGGAAGATAATTTTTTCTGTAAGACGTGCAAAATTACAACTTCGAGCCA
GACAAGTTTCGATGCCCATTTGCGAGGCAAAAAGCACCAAGCAAAATCAGAAGCAAGTAAGAAAGTAGTAGAGAAGATCACAGTGACCCCTGTGGAAGAAGAAGAAGAAG
AAGAAGAACTTGAAGAAATTAAACCGGGCCCTGAAATTGAAAACAAGGGGTTCTTCAAATTCTGGTGCGAAATCTGCCAAATTGGAACTCAGAGTATGATCGTTATGGAG
AATCATAACATGGGGAAGAAGCACAAAACTCGCCTTCTCAAACTTGCA
mRNA sequenceShow/hide mRNA sequence
CGGCGGGTTAAAGAAGAGATAAGGATTAGAGAGATGGCTTGGCGGCGGAAGGTGGAGGTGGAGATTAGGAGGGAAATAATCATGGAGCAAGAACTAGCCATTCTTAGGGC
TGCTGAACGAACCCTAGATGATGAACAATTTTCCATGAAATCGAGTGGACAAAGAATGCTTAATCAGTCGAATTCGTCGCCACTTCGATTTCTGGAACCCCCAAAAGAGG
CTACGAATGATGAGGAAAAGGACAAGCCAATCCTTCTGGCAAGGCCAAACCCACAACGATTCGAAGCCAAGCGGAAAGCCATGAGACCACCTACAGAAGCCGAGGCAGAG
GCTGTCGGTACCGAACCCAAGCCGCCATTTGGCTGGATTTTGAAGAAAGCCAAGAAAGATGAGGAAGATAATTTTTTCTGTAAGACGTGCAAAATTACAACTTCGAGCCA
GACAAGTTTCGATGCCCATTTGCGAGGCAAAAAGCACCAAGCAAAATCAGAAGCAAGTAAGAAAGTAGTAGAGAAGATCACAGTGACCCCTGTGGAAGAAGAAGAAGAAG
AAGAAGAACTTGAAGAAATTAAACCGGGCCCTGAAATTGAAAACAAGGGGTTCTTCAAATTCTGGTGCGAAATCTGCCAAATTGGAACTCAGAGTATGATCGTTATGGAG
AATCATAACATGGGGAAGAAGCACAAAACTCGCCTTCTCAAACTTGCA
Protein sequenceShow/hide protein sequence
RRVKEEIRIREMAWRRKVEVEIRREIIMEQELAILRAAERTLDDEQFSMKSSGQRMLNQSNSSPLRFLEPPKEATNDEEKDKPILLARPNPQRFEAKRKAMRPPTEAEAE
AVGTEPKPPFGWILKKAKKDEEDNFFCKTCKITTSSQTSFDAHLRGKKHQAKSEASKKVVEKITVTPVEEEEEEEELEEIKPGPEIENKGFFKFWCEICQIGTQSMIVME
NHNMGKKHKTRLLKLA