CuGenDBv2

Gene ID	MS002349
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome c oxidase assembly factor 6
Genome location	scaffold30:4313499..4314033
RNA-Seq Expression	MS002349
Synteny	MS002349
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domains	IPR003213 - Cytochrome c oxidase, subunit VIb IPR036549 - Cytochrome c oxidase, subunit VIb superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008443871.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo]

4.2e-53

91.23

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPT+
Subjt:  PLSLPQPYTFKPTS

XP_022134674.1 uncharacterized protein LOC111006886 [Momordica charantia]

3.3e-58

100

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PLSLPQPYTFKPTS
Subjt:  PLSLPQPYTFKPTS

XP_022926034.1 cytochrome c oxidase assembly factor 6 [Cucurbita moschata]

1.0e-51

90.35

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECKA RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPTS
Subjt:  PLSLPQPYTFKPTS

XP_022973432.1 cytochrome c oxidase assembly factor 6 [Cucurbita maxima]

4.6e-52

90.35

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECKA RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPTS
Subjt:  PLSLPQPYTFKPTS

XP_038878579.1 uncharacterized protein LOC120070767 [Benincasa hispida]

2.0e-55

96.49

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADASGGLDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPT+
Subjt:  PLSLPQPYTFKPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTX1 Uncharacterized protein

5.0e-52

88.6

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA EAD+SGG DEVH+DVL+ SRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECKALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPT+
Subjt:  PLSLPQPYTFKPTS

A0A1S3B9T5 uncharacterized protein LOC103487365 isoform X1

2.0e-53

91.23

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPT+
Subjt:  PLSLPQPYTFKPTS

A0A5A7SVN2 Cytochrome c oxidase assembly factor 6 isoform X3

2.0e-53

91.23

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPT+
Subjt:  PLSLPQPYTFKPTS

A0A6J1BZF0 uncharacterized protein LOC111006886

1.6e-58

100

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PLSLPQPYTFKPTS
Subjt:  PLSLPQPYTFKPTS

A0A6J1I7I2 cytochrome c oxidase assembly factor 6

2.2e-52

90.35

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECKA RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPTS
        PL LPQPYTFKPTS
Subjt:  PLSLPQPYTFKPTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein

1.2e-42

68.14

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC   R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPT
        P+SLPQPYTFKP+
Subjt:  PLSLPQPYTFKPT

AT5G58005.2 Cytochrome c oxidase, subunit Vib family protein

1.2e-42

68.14

Show/hide

Query:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC   R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLSLPQPYTFKPT
        P+SLPQPYTFKP+
Subjt:  PLSLPQPYTFKPT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGCTCGCGATGCTTTTTATGCTTGTGT
GGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTT
GGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTT
AAGCCCACTAGT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTF
KPTS

MS002349 (gene) of Bitter gourd (TR) v1 genome