CuGenDBv2

Gene ID	MS002376
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Genome location	scaffold30:4474582..4474951
RNA-Seq Expression	MS002376
Synteny	MS002376
Gene Ontology terms	GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589799.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-36

92.31

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHET LASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

XP_022134633.1 uncharacterized protein LOC111006855 [Momordica charantia]

8.6e-41

98.91

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKSE
        MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAA DEDDKLDEIAREAKRRLDERLRTQRKSE
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKSE

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]

5.8e-37

93.41

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]

5.8e-37

93.41

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]

5.8e-37

92.31

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C2J4 uncharacterized protein LOC111006855

4.2e-41

98.91

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKSE
        MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAA DEDDKLDEIAREAKRRLDERLRTQRKSE
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKSE

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X1

2.8e-37

93.41

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

A0A6J1E765 uncharacterized protein LOC111430042 isoform X2

2.8e-37

93.41

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKLD  AREAKRRLDERLRTQRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

A0A6J1JLN2 uncharacterized protein LOC111485711 isoform X2

1.5e-35

91.21

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKL   AREAKRRLDERLRTQ KS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X1

1.5e-35

91.21

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Query:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP IAAQALTRRSVLCLYTSNHETLLASNPSL+RSLL  ADEDDKL   AREAKRRLDERLRTQ KS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G15580.1 RING/U-box superfamily protein

1.2e-11

46.32

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Query:  MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAA---DEDDKLDEIAREAKRRLDERLR
        MAGMLPGVECARRRR H      ++   +   A A    TRR    LYT+NHE+  A     +RS+   +   D D+KLD  A+EAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAA---DEDDKLDEIAREAKRRLDERLR

AT2G15580.2 RING/U-box superfamily protein

1.2e-11

46.32

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Query:  MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAA---DEDDKLDEIAREAKRRLDERLR
        MAGMLPGVECARRRR H      ++   +   A A    TRR    LYT+NHE+  A     +RS+   +   D D+KLD  A+EAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCH------QNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAA---DEDDKLDEIAREAKRRLDERLR

Sequences

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CDS sequence

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ATGGCCGGAATGCTTCCTGGAGTAGAGTGTGCTAGAAGAAGACGGTGTCATCAGAACAAAGTATGGTCCGATTCACCAGCGATCGCCGCTCAGGCCCTAACCAGGAGATC
CGTTCTCTGCTTGTACACGAGCAACCACGAAACCCTACTCGCTTCAAATCCATCTCTGAAGAGAAGCCTGTTAGCCGCGGCAGACGAAGACGATAAATTGGACGAAATTG
CGAGAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGAACGCAGAGGAAATCAGAG

mRNA sequence

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Protein sequence

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MAGMLPGVECARRRRCHQNKVWSDSPAIAAQALTRRSVLCLYTSNHETLLASNPSLKRSLLAAADEDDKLDEIAREAKRRLDERLRTQRKSE

MS002376 (gene) of Bitter gourd (TR) v1 genome