; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002388 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002388
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSerine-rich protein-related
Genome locationscaffold30:4531570..4531887
RNA-Seq ExpressionMS002388
SyntenyMS002388
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587860.1 hypothetical protein SDJN03_16425, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3472.64Show/hide
Query:  LISMASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHG
        +I+  + S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSIAAI++AQL+L + AKANA+RAFLL II+PS ND QRRRNF+PRPSRFCLMN HG
Subjt:  LISMASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHG

Query:  TGLAVS
        TGLAVS
Subjt:  TGLAVS

XP_022134810.1 uncharacterized protein LOC111006991 [Momordica charantia]7.6e-49100Show/hide
Query:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL
        MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL
Subjt:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL

Query:  AVS
        AVS
Subjt:  AVS

XP_022921799.1 uncharacterized protein LOC111429944 [Cucurbita moschata]2.0e-3377.78Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+FL QII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

XP_022927032.1 uncharacterized protein LOC111433980 [Cucurbita moschata]1.5e-3375.76Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI AI++AQL+L + AKANA+RAFLL II+PS ND QRRRNF+PRPSRFCLMN HGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

XP_023515429.1 uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]4.0e-3478.79Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+FLLQII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

TrEMBL top hitse value%identityAlignment
A0A0A0LYY6 Uncharacterized protein6.5e-3073.2Show/hide
Query:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSA-TSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        + R+CLCSPT HPGSFRCSFHRNR K+ S+ +SSSS++ I+TA L+   LAKANALR+FLLQ+IKPS ND QRRRNF+PRPSRFCLMN+H TGLAVS
Subjt:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSA-TSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

A0A6J1BZD6 uncharacterized protein LOC1110069913.7e-49100Show/hide
Query:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL
        MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL
Subjt:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGL

Query:  AVS
        AVS
Subjt:  AVS

A0A6J1E1K3 uncharacterized protein LOC1114299449.7e-3477.78Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+FL QII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

A0A6J1EG01 uncharacterized protein LOC1114339807.4e-3475.76Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI AI++AQL+L + AKANA+RAFLL II+PS ND QRRRNF+PRPSRFCLMN HGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

A0A6J1KSU0 uncharacterized protein LOC1114972771.7e-3375.76Show/hide
Query:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS
        S  S R+CLCSPT HPGSFRCSFHRNRRK  + +SSSSI+AI++AQL+L + AKANA+RAFLL II+PS ND QRRRNF PRPSRFCLMN HGTGLAVS
Subjt:  SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67910.1 unknown protein1.6e-0446.51Show/hide
Query:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRN----RRKVVSATS
        ++  ++ +K  CLCSPT HPGSFRC  HR+    R K + A S
Subjt:  MASNSAPSKRRCLCSPTNHPGSFRCSFHRN----RRKVVSATS

AT5G11090.1 serine-rich protein-related3.9e-1137.84Show/hide
Query:  ISMASNSAPS-----KRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRN
        IS++ N  PS      RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++   A  N+L           R  L  +I+PS +  +RR  
Subjt:  ISMASNSAPS-----KRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRN

Query:  FNPRPSRFCLM
        + PRPSR  +M
Subjt:  FNPRPSRFCLM

AT5G20370.1 serine-rich protein-related2.2e-0938.53Show/hide
Query:  SNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAIS---------TAQLDLAMLAKANAL------------RAFLLQIIKPSGNDPQRRR
        S++  +KR+CLCSPT HPGSFRCSFHR      S T +SS    +            L+L  LA  N+L            R+    + KPS     RR 
Subjt:  SNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAIS---------TAQLDLAMLAKANAL------------RAFLLQIIKPSGNDPQRRR

Query:  NFNPRPSRF
         F PR SRF
Subjt:  NFNPRPSRF

AT5G25280.1 serine-rich protein-related1.3e-0937.76Show/hide
Query:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN
        S+RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++   A  N+L           R  L  +I+PS +  +RR  + PR SR   M+
Subjt:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN

AT5G25280.2 serine-rich protein-related1.3e-0937.76Show/hide
Query:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN
        S+RRC+CSPT HPGSFRCS H+N    V+       A+ +T  L++   A  N+L           R  L  +I+PS +  +RR  + PR SR   M+
Subjt:  SKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANAL-----------RAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAATTTCCATGGCCTCAAATTCTGCCCCCTCCAAACGCAGGTGCCTCTGTTCTCCGACCAACCATCCCGGCTCTTTCCGCTGCAGTTTTCATCGGAACCGCCGCAAGGT
CGTCTCCGCTACGTCCTCATCCTCCATTGCTGCCATTTCCACTGCGCAATTGGATCTCGCGATGTTGGCGAAGGCGAACGCGCTGAGGGCGTTTCTTCTGCAGATCATCA
AGCCGTCGGGTAACGATCCTCAGCGGCGGAGGAATTTCAACCCGAGGCCTTCCAGGTTTTGCTTGATGAACAATCATGGAACAGGATTGGCTGTTTCT
mRNA sequenceShow/hide mRNA sequence
CTAATTTCCATGGCCTCAAATTCTGCCCCCTCCAAACGCAGGTGCCTCTGTTCTCCGACCAACCATCCCGGCTCTTTCCGCTGCAGTTTTCATCGGAACCGCCGCAAGGT
CGTCTCCGCTACGTCCTCATCCTCCATTGCTGCCATTTCCACTGCGCAATTGGATCTCGCGATGTTGGCGAAGGCGAACGCGCTGAGGGCGTTTCTTCTGCAGATCATCA
AGCCGTCGGGTAACGATCCTCAGCGGCGGAGGAATTTCAACCCGAGGCCTTCCAGGTTTTGCTTGATGAACAATCATGGAACAGGATTGGCTGTTTCT
Protein sequenceShow/hide protein sequence
LISMASNSAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRAFLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS