; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002398 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002398
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold30:4590973..4592484
RNA-Seq ExpressionMS002398
SyntenyMS002398
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR027370 - RING-type zinc-finger, LisH dimerisation motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06338.1 uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]4.3e-8786.49Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDAISSH VRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

XP_008443927.1 PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo]9.6e-8785.95Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDAISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

XP_022134599.1 uncharacterized protein LOC111006826 [Momordica charantia]9.0e-10197.85Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFP+HIESIENTFWGPERIRYSSL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA
        GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA

XP_038878631.1 uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]3.9e-8886.02Show/hide
Query:  YVAGVVPFSNQMDVLSEE-DQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSS
        +++G+VPFSNQMDV SEE D+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+TVLEERPAFKFAAHCNSEFPDHIESIE TFWGPERIRY+S
Subjt:  YVAGVVPFSNQMDVLSEE-DQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSS

Query:  LGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
         GKDA SSHG+RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++DDSKGG+
Subjt:  LGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

XP_038878632.1 uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]1.6e-8986.49Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQMDV SEED+S ARPVFMKRSRHQYSHQYCRRGSTS ANAS SRENRV+TVLEERPAFKFAAHCNSEFPDHIESIE TFWGPERIRY+S 
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDA SSHG+RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLC EP  ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

TrEMBL top hitse value%identityAlignment
A0A1S3B956 uncharacterized protein LOC103487402 isoform X24.7e-8785.95Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDAISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

A0A1S4DUW7 uncharacterized protein LOC103487402 isoform X11.0e-8687.36Show/hide
Query:  GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKD
        G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SLGKD
Subjt:  GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKD

Query:  AISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        AISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  AISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

A0A5A7U906 RING-type domain-containing protein4.7e-8785.95Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDAISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

A0A5D3C5B4 RING-type domain-containing protein2.1e-8786.49Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++G+VPFSNQ DV SEED SLARP+FMKRSRH YSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPD IESIE+TF GPERIRY+SL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ
        GKDAISSH VRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VEDRSDPPCPLCT+   ++DDSKGG+
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQ

A0A6J1BZ68 uncharacterized protein LOC1110068264.3e-10197.85Show/hide
Query:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL
        +++GVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFP+HIESIENTFWGPERIRYSSL
Subjt:  YVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSL

Query:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA
        GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA
Subjt:  GKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19680.1 RING/U-box superfamily protein1.4e-1138.04Show/hide
Query:  SIENTFWGPERIRYS--SLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTE
        S +N   G  R R S  S  + + S    +  CG C KL+  +     + ++  +LP+ AVL CGHVYHA CLE  +   ++ DP CP+CTE
Subjt:  SIENTFWGPERIRYS--SLGKDAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTE

AT1G75400.1 RING/U-box superfamily protein8.3e-1245.16Show/hide
Query:  RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT
        + +CG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE  +   ++ DP CP+CT
Subjt:  RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT

AT2G21500.1 RING/U-box superfamily protein5.4e-1136.67Show/hide
Query:  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT
        S +N  +G  R +  +LG    +    +  CG C + L  + L       +++EL VAA+L CGHVYH++CLE  +   D+ DP CP+CT
Subjt:  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT

AT2G21500.2 RING/U-box superfamily protein5.4e-1136.67Show/hide
Query:  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT
        S +N  +G  R +  +LG    +    +  CG C + L  + L       +++EL VAA+L CGHVYH++CLE  +   D+ DP CP+CT
Subjt:  SIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT

AT4G39140.1 RING/U-box superfamily protein5.4e-1141.25Show/hide
Query:  LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT
        L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +CLE  +   D+ DP CP+CT
Subjt:  LGKDAISSHGVRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTATCTTACGTATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGCCCAGTATTCATGAAGCGTTCACGTCA
TCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAAT
TTGCTGCTCATTGCAACTCAGAGTTCCCAGACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCA
TCTCATGGAGTGAGAATGCTATGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTT
AGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACG
ACTCAAAAGGAGGACAGGCA
mRNA sequenceShow/hide mRNA sequence
TCTTATCTTACGTATGTTGCAGGTGTGGTGCCTTTTTCCAATCAAATGGATGTGCTGTCGGAAGAGGATCAGAGTCTTGCTCGCCCAGTATTCATGAAGCGTTCACGTCA
TCAGTATAGTCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCTCGTGAAAATCGAGTCAGAACTGTACTTGAAGAGCGACCCGCCTTTAAAT
TTGCTGCTCATTGCAACTCAGAGTTCCCAGACCACATAGAGAGCATTGAGAATACCTTTTGGGGGCCAGAGAGGATAAGGTACAGTTCCTTAGGGAAGGATGCAATTTCA
TCTCATGGAGTGAGAATGCTATGTGGAATTTGCCAAAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGTGAACTTCCTGTTGCTGCGGTTTT
AGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGATCAGGTCAAAGGTCGAAGACAGAAGCGATCCACCTTGTCCCTTGTGCACGGAACCGTCCACCAAAATCGACG
ACTCAAAAGGAGGACAGGCA
Protein sequenceShow/hide protein sequence
SYLTYVAGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDHIESIENTFWGPERIRYSSLGKDAIS
SHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDDSKGGQA