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MS002419 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002419
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationscaffold30:4790596..4791342
RNA-Seq ExpressionMS002419
SyntenyMS002419
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443963.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo]1.3e-4475.21Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+QV
Subjt:  FKLINDKSHIKHFGIRDGEQV

XP_008443964.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo]2.9e-4474.38Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

XP_011655436.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus]1.5e-4576.03Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

XP_022144848.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Momordica charantia]2.1e-6399.17Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKLINDKSHIKHFGIRDGEQ+
Subjt:  FKLINDKSHIKHFGIRDGEQV

XP_038880358.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]5.3e-4676.03Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR RSNSFRRS  Y++LPPQL+RLSVLKLDGSSFEVQ+AR ATVA +RDAVESVFC + MNKED KISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKLI+DKS IKHFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein7.4e-4676.03Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MSH+E   P+SC    +SPR  SNSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

A0A1S3B9C0 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X16.3e-4575.21Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+QV
Subjt:  FKLINDKSHIKHFGIRDGEQV

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X21.4e-4474.38Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X21.4e-4474.38Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MS +E   P+SC    +SPR  +NSFRRSL Y RLPPQLLRLSVLKLDGSSFEVQV R ATVA +RDAVESVFC++ MNKED  ISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKL++DKS I+HFGIRDG+Q+
Subjt:  FKLINDKSHIKHFGIRDGEQV

A0A6J1CUD1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like1.0e-6399.17Show/hide
Query:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
        MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH
Subjt:  MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKH

Query:  FKLINDKSHIKHFGIRDGEQV
        FKLINDKSHIKHFGIRDGEQ+
Subjt:  FKLINDKSHIKHFGIRDGEQV

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein9.4e-0632.56Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + L     KL  D+  ++ +GIR+ ++V
Subjt:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.7e-1040.96Show/hide
Query:  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL   + KL++D + ++  GIR+  QV
Subjt:  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein9.4e-0632.56Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + L     KL  D+  ++ +GIR+ ++V
Subjt:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein9.4e-0632.56Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        Q + + V K+DG    V V + ATV DL+ A++  + Q+   +E     ISW +VW  + L     KL  D+  ++ +GIR+ ++V
Subjt:  QLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKED--TKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein5.6e-2253Show/hide
Query:  SNSFRRSLSYQRLPPQ-LLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        S S RRS SY +LPPQ  ++LSV+KL+GS F+V+VA+  +VA+L+ AVE VF  I   +    ISW HVWGHFCLCY+  +L+NDK+ I++ G+ DG+Q+
Subjt:  SNSFRRSLSYQRLPPQ-LLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

AT3G07860.1 Ubiquitin-like superfamily protein1.2e-1140.96Show/hide
Query:  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        +RLSV+KLDGSS +V V   AT+ DL+  ++    ++   N     ISW HVW +FCL   + KL++D + ++  GIR+  QV
Subjt:  LRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQI-MMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

AT4G32270.1 Ubiquitin-like superfamily protein5.1e-2345.22Show/hide
Query:  PESCFCTSLSPRLRSNSF--RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLIND
        P      SLSP    +    RRS +Y ++P + ++L+VLKLDGSSF +QV + ATV +L+ AVE+ F  + ++    KISWPHVWG FCL Y+  +LIN+
Subjt:  PESCFCTSLSPRLRSNSF--RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLIND

Query:  KSHIKHFGIRDGEQV
          ++  FGI+DG+Q+
Subjt:  KSHIKHFGIRDGEQV

AT4G32270.2 Ubiquitin-like superfamily protein8.4e-1848.28Show/hide
Query:  LPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        +P + ++L+VLKLDGSSF   V + ATV +L+ AVE+ F  + ++    KISWPHVWG FCL Y+  +LIN+  ++  FGI+DG+Q+
Subjt:  LPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV

AT5G25340.1 Ubiquitin-like superfamily protein1.8e-2353.68Show/hide
Query:  RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV
        RR+ SY +LP + +RLSVLKLDGSSF+V V   ATV DL+ A+E+ F  +   K  +KISW HVWGHFCLC+   KLI D   I ++G++DG++V
Subjt:  RRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHIKHFGIRDGEQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCC
GCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCT
GTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATT
AAACATTTCGGAATCAGGGATGGTGAACAGGTA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCACGTTGAATCGGATTTTCCGGAATCATGTTTTTGCACTAGTCTCTCGCCTCGGCTTCGGAGCAACAGCTTTCGCCGGAGTCTCAGCTACCAGAGGCTTCCGCC
GCAGCTCCTCCGGCTTTCGGTGCTGAAACTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGAAAGCGACGGTGGCAGATCTCAGAGACGCGGTGGAGAGTGTTTTCT
GTCAAATTATGATGAATAAAGAAGATACCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAACTGATCAACGATAAATCACATATT
AAACATTTCGGAATCAGGGATGGTGAACAGGTA
Protein sequenceShow/hide protein sequence
MSHVESDFPESCFCTSLSPRLRSNSFRRSLSYQRLPPQLLRLSVLKLDGSSFEVQVARKATVADLRDAVESVFCQIMMNKEDTKISWPHVWGHFCLCYKHFKLINDKSHI
KHFGIRDGEQV