; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002455 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002455
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationscaffold318:166859..167271
RNA-Seq ExpressionMS002455
SyntenyMS002455
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0071555 - cell wall organization (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP50440.1 polygalacturonase 11a, partial [Medicago truncatula]1.6e-4669.34Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        +F FNFVNNS+V G+TS +SKNFHV V  CNN+TFD FTITA  DSPN DGIH+G+STG+ I+++NIGTGDDCVSIGD SKQITV  V CGPGH +SIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKF  EE VEG+ +K C L  T NGVRIK WP  PG
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

XP_015881036.1 exopolygalacturonase-like [Ziziphus jujuba]2.4e-4769.92Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + R+NF+ NSI++GITSL+SK FH+NV+ CNNVTFDH T+TA EDSPN DGIHIGRSTGINI  SNI TGDDC+S+GD +KQITV   TCGPGH IS+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP
        LGK+  EE VEGV ++ C L NT NGVRIK WP
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP

XP_022143524.1 polygalacturonase-like [Momordica charantia]7.7e-6291.11Show/hide
Query:  RFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGSLG
        +FNFVNNSIVKGITSLNSKNFHVNVM CNNVTFDHFTI A EDSPN DGIHIGRS+GINIISSNIGT DDCVSIGDTSKQIT+TDVTCGPGH ISIGSLG
Subjt:  RFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGSLG

Query:  KFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        KFE EEIVEGVIVKKCKLINTSNGV IK WPGTPG
Subjt:  KFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

XP_022157826.1 exopolygalacturonase-like [Momordica charantia]4.1e-4768.61Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        S +FNFV NSIVK ITSL+SKNFH+NV+ C N+TF H TITA  +SPN DGIHIG S GINI+++ I TGDDC+S+GDT+KQIT++DVTCGPGH I+IGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGK+  E+ VEGV +KKCKLI+T+NGVRIK WP + G
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

XP_022159064.1 exopolygalacturonase-like [Momordica charantia]6.3e-6492.7Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        SFRFNFVN+SIVKGITSLNSKNFHVNVM CNNVTFDHFTITA EDSPN DGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVT+VTCGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKFE EE VEGV VKKCKLINTSNGVRIK WPGTPG
Subjt:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

TrEMBL top hitse value%identityAlignment
A0A6J1CPK0 polygalacturonase-like3.7e-6291.11Show/hide
Query:  RFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGSLG
        +FNFVNNSIVKGITSLNSKNFHVNVM CNNVTFDHFTI A EDSPN DGIHIGRS+GINIISSNIGT DDCVSIGDTSKQIT+TDVTCGPGH ISIGSLG
Subjt:  RFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGSLG

Query:  KFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        KFE EEIVEGVIVKKCKLINTSNGV IK WPGTPG
Subjt:  KFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

A0A6J1DZB6 exopolygalacturonase-like2.0e-4768.61Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        S +FNFV NSIVK ITSL+SKNFH+NV+ C N+TF H TITA  +SPN DGIHIG S GINI+++ I TGDDC+S+GDT+KQIT++DVTCGPGH I+IGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGK+  E+ VEGV +KKCKLI+T+NGVRIK WP + G
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

A0A6J1E198 exopolygalacturonase-like1.8e-6493.43Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        SFRFNFVN+SIVKGITSLNSKNFHVNVM CNNVTFDHFTITA EDSPN DGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKFE EE VEGV VKKCKLINTSNGVRIK WPGTPG
Subjt:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

A0A6P4A5K0 exopolygalacturonase-like1.2e-4769.92Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + R+NF+ NSI++GITSL+SK FH+NV+ CNNVTFDH T+TA EDSPN DGIHIGRSTGINI  SNI TGDDC+S+GD +KQITV   TCGPGH IS+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP
        LGK+  EE VEGV ++ C L NT NGVRIK WP
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP

G7ISY5 Polygalacturonase 11c, putative7.5e-4769.34Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        +F FNFVNNS+V G+TS +SKNFHV V  CNN+TFD FTITA  DSPN DGIH+G+STG+ I+++NIGTGDDCVSIGD SKQITV  V CGPGH +SIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKF  EE VEG+ +K C L  T NGVRIK WP  PG
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.9e-4057.89Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + R   V NSI++ +T+L+SKNFHVNV+ C N+TF+ F I+A+E S N DGIHIGRS G+NII++ I TGDDC+S+GD SK I +T++TCGPGH IS+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWP
        LG+++ EE V G+ VK C +  + NGVRIK WP
Subjt:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWP

Q39766 Polygalacturonase2.0e-4156.2Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + RF+FV N++++ ITS +SK FH+NV +C N+T +   I A ++SPN DGIH+G+S G+NII+S+I TGDDC+SIGD +K + + ++TCGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKF+ EE VEG+ +  C + NTSNG RIK WPG  G
Subjt:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

Q39786 Polygalacturonase4.6e-4155.47Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + RF+F+ N++++ ITS +SK FH+NV +C N+T +   I A ++SPN DGIH+G+S G+NII+S+I TGDDC+SIGD +K + + ++TCGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKF+ EE VEG+ +  C + NTSNG RIK WPG  G
Subjt:  LGKFE-EEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

Q40312 Polygalacturonase1.7e-4868.61Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        +F FNFVNNSIV+G+TS +SKNFHV V  C N+TFD FTITA  DSPN DGIH+G+ST + I+++NIGTGDDCVSIGD SKQITV  V CGPGH +S+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG
        LGKF  EE VEG+ VK C L  T NGVRIK WP  PG
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTPG

Q6H9K0 Exopolygalacturonase (Fragment)1.8e-3752.94Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + RF+F+ +++V+ ITSLNSK FH+NV+ C ++TF H T+TA   S N DGIH+G S G+ I ++ I TGDDC+SIG  S+ +T+T V CGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP
        LG++  E+ V G+ VK C    T NGVR+K WP +P
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein3.1e-3753.38Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        S RF+F+ NS ++ I+S+++KNFH+NV+   N+T ++  I A EDSPN DGIH+GRS G+ I++S I TGDDC+S+GD  K + V  VTCGPGH IS+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP
        LG++  E+ V G+ V  C L  T NG+RIK WP
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP

AT3G07840.1 Pectin lyase-like superfamily protein3.1e-3751.88Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        S RF+FV N+ ++ I+S+++KNFH+NV+   N+TFD+  + A  +SPN DGIH+GRS G+ I++S I TGDDC+S+GD  K + V +V CGPGH IS+GS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP
        LG++  E+ V G+ V  C L  T NG+RIK WP
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP

AT3G07850.1 Pectin lyase-like superfamily protein2.8e-3855.15Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + RF  + NS +  ITS NSK FH+N+++C N+T     I A  +S N DGIHIGRS G+N+I + I TGDDCVSIGD ++ + V +V CGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP
        LG++  E+ V+GV V+KC + NT NGVRIK WPG+P
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP

AT3G14040.1 Pectin lyase-like superfamily protein3.7e-3855.15Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        + RF  + NS +  ITS NSK FH+N+++C N+T     I A  +S N DGIHIGRS G+N+I + I TGDDCVSIGD ++ + V +V CGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP
        LG++  E+ V+GV V+KC + NT NGVRIK WPG+P
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWPGTP

AT5G48140.1 Pectin lyase-like superfamily protein4.8e-3857.14Show/hide
Query:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS
        S RF+FV ++ ++GITSL++K+FH+NV+   NVTF+   I A  +SPN DGIH+GRS GI II+S I TGDDCVS+GD  K + V  VTCGPGH ISIGS
Subjt:  SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGS

Query:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP
        LG++  EE V G+ +  C L  T NG+RIK WP
Subjt:  LGKF-EEEIVEGVIVKKCKLINTSNGVRIKIWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTTTTAGGTTCAACTTCGTCAACAACTCAATAGTGAAGGGTATAACTTCATTGAACAGCAAGAATTTCCATGTCAATGTTATGAGTTGCAATAACGTTACCTTCGACCA
TTTCACAATTACTGCATCAGAGGACAGTCCAAACATTGATGGAATTCACATAGGTCGTTCCACTGGGATTAACATCATCAGCTCCAACATTGGAACTGGAGATGATTGTG
TGTCTATAGGAGACACAAGCAAACAAATAACGGTCACAGATGTCACTTGTGGACCAGGACATGACATTAGCATAGGAAGTTTGGGAAAGTTCGAAGAAGAGATCGTGGAA
GGAGTTATAGTAAAAAAGTGCAAATTAATAAATACTTCCAACGGTGTTAGGATCAAAATATGGCCTGGTACTCCTGGC
mRNA sequenceShow/hide mRNA sequence
AGTTTTAGGTTCAACTTCGTCAACAACTCAATAGTGAAGGGTATAACTTCATTGAACAGCAAGAATTTCCATGTCAATGTTATGAGTTGCAATAACGTTACCTTCGACCA
TTTCACAATTACTGCATCAGAGGACAGTCCAAACATTGATGGAATTCACATAGGTCGTTCCACTGGGATTAACATCATCAGCTCCAACATTGGAACTGGAGATGATTGTG
TGTCTATAGGAGACACAAGCAAACAAATAACGGTCACAGATGTCACTTGTGGACCAGGACATGACATTAGCATAGGAAGTTTGGGAAAGTTCGAAGAAGAGATCGTGGAA
GGAGTTATAGTAAAAAAGTGCAAATTAATAAATACTTCCAACGGTGTTAGGATCAAAATATGGCCTGGTACTCCTGGC
Protein sequenceShow/hide protein sequence
SFRFNFVNNSIVKGITSLNSKNFHVNVMSCNNVTFDHFTITASEDSPNIDGIHIGRSTGINIISSNIGTGDDCVSIGDTSKQITVTDVTCGPGHDISIGSLGKFEEEIVE
GVIVKKCKLINTSNGVRIKIWPGTPG