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MS002460 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002460
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold318:242983..243231
RNA-Seq ExpressionMS002460
SyntenyMS002460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0841.18Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS
        LL KW+WR+  E++ LW  + +AKY    + DF P I K   +K PW QI+K I   ++     I  G  +SFWH  W+ S SLS
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS

KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0839.29Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS
        LL+KW+WRY +E N LW+RL + KY  K   D    I     K PW  I+  ID  K  +   +  G ++SFW+  W P   LS
Subjt:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS

KAF5177290.1 Ribonuclease h-like superfamily protein [Thalictrum thalictroides]2.3e-0836.14Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL
        L  KW+WRY  EE  LW+R+  +KY +   ++WP  ++       W  I++  DL K    CR+G+G R  FW D W+   +L
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL

KAF5187145.1 hypothetical protein FRX31_023283 [Thalictrum thalictroides]6.4e-1139.76Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRLKCP-WTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL
        LLAKW+WR+  E + LW+R+   KY     D+WP    Q   C  W  ++   D+ K    CR+G G R+ FWHD W+ +T+L
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRLKCP-WTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.7e-0839.29Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS
        LL+KW+WRY +E N LW+RL + KY  K   D    I     K PW  I+  ID  K  +   +  G ++SFW+  W P   LS
Subjt:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.1e-0841.18Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS
        LL KW+WR+  E++ LW  + +AKY    + DF P I K   +K PW QI+K I   ++     I  G  +SFWH  W+ S SLS
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.1e-0841.18Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS
        LL KW+WR+  E++ LW  + +AKY    + DF P I K   +K PW QI+K I   ++     I  G  +SFWH  W+ S SLS
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTV-DFWPLI-KPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS

A0A5D3C9J6 LINE-1 retrotransposable element ORF2 protein7.2e-0838.55Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL
        LL+KW+WRY +E N LW+RL + KY  K   D    I     K PW  I+  ID  K  +   +  G ++SFW   W P  +L
Subjt:  LLAKWIWRYITEENVLWKRLTNAKY-WKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL

A0A7J6UYT6 Ribonuclease h-like superfamily protein1.1e-0836.14Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL
        L  KW+WRY  EE  LW+R+  +KY +   ++WP  ++       W  I++  DL K    CR+G+G R  FW D W+   +L
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPL-IKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL

A0A7J6VSF2 Uncharacterized protein3.1e-1139.76Show/hide
Query:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRLKCP-WTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL
        LLAKW+WR+  E + LW+R+   KY     D+WP    Q   C  W  ++   D+ K    CR+G G R+ FWHD W+ +T+L
Subjt:  LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRLKCP-WTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTTGGCTAAATGGATTTGGAGATATATTACTGAAGAAAACGTGCTATGGAAAAGACTCACCAATGCAAAATACTGGAAATCAACTGTTGATTTTTGGCCCTTGATTAA
ACCACAGCGACTCAAATGTCCTTGGACACAAATTGTGAAATACATCGATCTGGTCAAGGATAGACGCATTTGCAGAATTGGCAGAGGCACTAGAGTCAGTTTTTGGCATG
ACAGATGGGTTCCCAGTACCTCTTTATCA
mRNA sequenceShow/hide mRNA sequence
CTTTTGGCTAAATGGATTTGGAGATATATTACTGAAGAAAACGTGCTATGGAAAAGACTCACCAATGCAAAATACTGGAAATCAACTGTTGATTTTTGGCCCTTGATTAA
ACCACAGCGACTCAAATGTCCTTGGACACAAATTGTGAAATACATCGATCTGGTCAAGGATAGACGCATTTGCAGAATTGGCAGAGGCACTAGAGTCAGTTTTTGGCATG
ACAGATGGGTTCCCAGTACCTCTTTATCA
Protein sequenceShow/hide protein sequence
LLAKWIWRYITEENVLWKRLTNAKYWKSTVDFWPLIKPQRLKCPWTQIVKYIDLVKDRRICRIGRGTRVSFWHDRWVPSTSLS