; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002464 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002464
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome locationscaffold318:312088..314657
RNA-Seq ExpressionMS002464
SyntenyMS002464
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]9.1e-5370Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+ +SVS SPFSL+ TKPK TH+S P+L + RS STPSNLK RGI HF PN   R  ARC S    GDGDSRTVLDAFFLGKALAEALTERIEST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL
        LSGIGRLQAE+QKQI DFQ+EVIERAK+AK+KAARDS EVQ P+S S+ SP I V S+     S PD  SES VN DP L
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]1.2e-5269.44Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN S R  ARC S    GDGDSRT+LDAFFLGKALAEALTERIEST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL
        LSGIG+LQAE+QKQI DFQ+EVIERAK+AK+KAAR++ EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL

XP_022154385.1 uncharacterized protein At4g13200, chloroplastic [Momordica charantia]8.4e-9196.37Show/hide
Query:  MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIE
        MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRS ARCCSSSGP     GDGDSRTVLDAFFLGKALAEALTERIE
Subjt:  MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIE

Query:  STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE
        STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTD QQLSKPDPYSESTVNLDPPLDVTNDEE
Subjt:  STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE

XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]8.5e-4363.64Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+  SVS S FS+LH+KPK TH SS           PSNLK R I    P  SPR   RC S    GDGDSRTVL+AFFLGKALAEALTER+EST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSESTVNLDPPL
        LSGIGRLQAE+QKQI+DFQEEVIERAK+A++KAARD+ EVQ PI  S SI SPTI V     +ST+QQQLS P   S +  N DPPL
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSESTVNLDPPL

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]8.5e-5974.05Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+ +SVS SPFSL+ TKPK TH+SS +L + RS STPSNLK R I HF PN SPR  ARC S    GDGDSRTVLDAFFLGKALAEALTERIESTVGEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVNLDPPL
        LSGIGRLQAE+QKQI DFQEEVIERAK+AKDKAARD+ EVQ P+S SITSPTI VT     ST++QQLS PD  SE+ VN DPPL
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVNLDPPL

TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein4.4e-5370Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+ +SVS SPFSL+ TKPK TH+S P+L + RS STPSNLK RGI HF PN   R  ARC S    GDGDSRTVLDAFFLGKALAEALTERIEST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL
        LSGIGRLQAE+QKQI DFQ+EVIERAK+AK+KAARDS EVQ P+S S+ SP I V S+     S PD  SES VN DP L
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X15.7e-5369.44Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        S I +SVS SPFSL+ TKPK TH+SSP+L   RS STPSNL+ RGI HF PN S R  ARC S    GDGDSRT+LDAFFLGKALAEALTERIEST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL
        LSGIG+LQAE+QKQI DFQ+EVIERAK+AK+KAAR++ EVQ P+S S+ SPTI V+S+     S PD  SES VN DPPL
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPL

A0A6J1DJG4 uncharacterized protein At4g13200, chloroplastic4.1e-9196.37Show/hide
Query:  MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIE
        MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRS ARCCSSSGP     GDGDSRTVLDAFFLGKALAEALTERIE
Subjt:  MSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGP-----GDGDSRTVLDAFFLGKALAEALTERIE

Query:  STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE
        STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTD QQLSKPDPYSESTVNLDPPLDVTNDEE
Subjt:  STVGEVLSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like5.4e-4361.46Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+ +SVSSS FS++ TK K TH SSP+L   RS ST SNLK R      PN S R  A C S    GDGD+RTVLDAFF+GKA AE LTER+ESTVGEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVNLDPPLDVTNDEE
        L  IGRLQAERQ+QI+DFQEEVI+RAK+AK+KA RD+ E Q PIS SI S TI VT     S++ QQ S P+ YSE+ VN DPP     DEE
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT-----STDQQQLSKPDPYSESTVNLDPPLDVTNDEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like1.6e-4262.89Show/hide
Query:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV
        SG+  SVS S FS+LH+KPK TH SS           PSNLK R I    P  SPR   RC S    GD DSRTVL+AFFLGKALAEALTER+EST+GEV
Subjt:  SGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEV

Query:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE
        LSGIGRLQAE+QKQI+DFQEEVIERAK+A++KAARD+ EVQ PI  S SI SPTI V     TST+QQQLS P   S +  N DPPL    DEE
Subjt:  LSGIGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPI--SPSITSPTIAV-----TSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE

SwissProt top hitse value%identityAlignment
Q8LDV3 Uncharacterized protein At4g13200, chloroplastic4.0e-1947.06Show/hide
Query:  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSSG--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSG
        S S FSL ++  + + HS   L  SRS      L+L         S  RST+    CS+ G   G+ ++++VLDAFFLGKALAE + ERIESTVGEVLS 
Subjt:  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSSG--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSG

Query:  IGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT
        IG+ QAE+QKQ+ + QEEV+ERAK+AK++AAR+++E Q      + S  +A+T
Subjt:  IGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT

Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein2.8e-2047.06Show/hide
Query:  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSSG--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSG
        S S FSL ++  + + HS   L  SRS      L+L         S  RST+    CS+ G   G+ ++++VLDAFFLGKALAE + ERIESTVGEVLS 
Subjt:  SSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTA--RCCSSSG--PGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSG

Query:  IGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT
        IG+ QAE+QKQ+ + QEEV+ERAK+AK++AAR+++E Q      + S  +A+T
Subjt:  IGRLQAERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATGAGTGGGATTCGAGCTTCAGTTTCCTCGTCCCCTTTTTCACTTTTGCACACTAAACCCAAATTTACCCACCATTCATCTCCAAATCTTGCTGTGTCCCGCTCCCC
TTCCACTCCCTCAAATCTCAAGCTTCGAGGAATTCCACATTTTCCACCAAATTCCTCTCCCAGATCCACAGCTCGTTGTTGCAGCAGCTCCGGCCCCGGTGATGGCGACA
GTAGGACTGTTCTAGATGCCTTTTTCTTAGGGAAAGCTCTAGCAGAAGCCTTGACTGAGCGTATCGAGTCAACAGTTGGAGAGGTTCTGAGTGGGATCGGGAGGCTGCAA
GCTGAACGACAAAAACAAATTGTTGATTTCCAGGAGGAGGTGATAGAAAGAGCTAAGAGAGCCAAGGACAAAGCTGCACGTGATTCCATAGAAGTACAAGAACCCATCTC
CCCCTCAATAACATCACCTACGATCGCAGTTACTTCGACCGATCAACAACAACTCTCGAAACCCGACCCATATTCAGAATCTACTGTGAACCTTGATCCTCCTCTCGATG
TAACGAATGACGAAGAG
mRNA sequenceShow/hide mRNA sequence
AAAATGAGTGGGATTCGAGCTTCAGTTTCCTCGTCCCCTTTTTCACTTTTGCACACTAAACCCAAATTTACCCACCATTCATCTCCAAATCTTGCTGTGTCCCGCTCCCC
TTCCACTCCCTCAAATCTCAAGCTTCGAGGAATTCCACATTTTCCACCAAATTCCTCTCCCAGATCCACAGCTCGTTGTTGCAGCAGCTCCGGCCCCGGTGATGGCGACA
GTAGGACTGTTCTAGATGCCTTTTTCTTAGGGAAAGCTCTAGCAGAAGCCTTGACTGAGCGTATCGAGTCAACAGTTGGAGAGGTTCTGAGTGGGATCGGGAGGCTGCAA
GCTGAACGACAAAAACAAATTGTTGATTTCCAGGAGGAGGTGATAGAAAGAGCTAAGAGAGCCAAGGACAAAGCTGCACGTGATTCCATAGAAGTACAAGAACCCATCTC
CCCCTCAATAACATCACCTACGATCGCAGTTACTTCGACCGATCAACAACAACTCTCGAAACCCGACCCATATTCAGAATCTACTGTGAACCTTGATCCTCCTCTCGATG
TAACGAATGACGAAGAG
Protein sequenceShow/hide protein sequence
KMSGIRASVSSSPFSLLHTKPKFTHHSSPNLAVSRSPSTPSNLKLRGIPHFPPNSSPRSTARCCSSSGPGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQ
AERQKQIVDFQEEVIERAKRAKDKAARDSIEVQEPISPSITSPTIAVTSTDQQQLSKPDPYSESTVNLDPPLDVTNDEE