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MS002482 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002482
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold318:483318..483536
RNA-Seq ExpressionMS002482
SyntenyMS002482
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D+IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.9e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

TrEMBL top hitse value%identityAlignment
A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein3.8e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein3.8e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein2.2e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D+IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein3.8e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein3.8e-1343.06Show/hide
Query:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE
        +W S I +KCKFF+W + ++ LN  D IQ R  ++ LNPSWC+ C+  N+ ++HLF+ CP++  LW +  +E
Subjt:  IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATGGGAATCTGTTATTCAAAAAAAATGCAAGTTTTTCTTATGGTGCTTGGCATATCGTCTCCTCAACATATTCGACAGGATCCAATCTCGGATGAAAACCCTCGACCT
CAATCCCAGTTGGTGTGTTCTCTGTAAAAAGATCAATAAGTCCCTTGATCACCTTTTTATGCATTGTCCATATTCTCTAGAGCTCTGGTACATTTTATTCAACGAATTT
mRNA sequenceShow/hide mRNA sequence
ATATGGGAATCTGTTATTCAAAAAAAATGCAAGTTTTTCTTATGGTGCTTGGCATATCGTCTCCTCAACATATTCGACAGGATCCAATCTCGGATGAAAACCCTCGACCT
CAATCCCAGTTGGTGTGTTCTCTGTAAAAAGATCAATAAGTCCCTTGATCACCTTTTTATGCATTGTCCATATTCTCTAGAGCTCTGGTACATTTTATTCAACGAATTT
Protein sequenceShow/hide protein sequence
IWESVIQKKCKFFLWCLAYRLLNIFDRIQSRMKTLDLNPSWCVLCKKINKSLDHLFMHCPYSLELWYILFNEF