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MS002486 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002486
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-protein homolog
Genome locationscaffold318:499131..499417
RNA-Seq ExpressionMS002486
SyntenyMS002486
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067970.1 uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]6.4e-3171.88Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        +LL+L A+ VVQPC A   +PLPLP  R+HVV+GL+N+TL VHCKSKDDDL  H+LV +G+EFQWTFKVN FGTTLFWCYL+KPNF+VSFES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

KAE8646232.1 hypothetical protein Csa_016625, partial [Cucumis sativus]3.1e-2566.67Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LL++L A++VVQPCMA   +P+P P   +HVV+GLSN+TL VHCKS DDDL    LV RG EF WTF+V+ FG TLFWCYLEKPNF+VSFES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

XP_004139722.1 S-protein homolog 1-like [Cucumis sativus]3.1e-2566.67Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LL++L A++VVQPCMA   +P+P P   +HVV+GLSN+TL VHCKS DDDL    LV RG EF WTF+V+ FG TLFWCYLEKPNF+VSFES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

XP_008461539.1 PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]3.9e-2869.79Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LLL+L A+V+VQP  A   +PLPLP   +HVV+GL N TLFVHCKSKDDDL NH+L  +G E QWTFKVN FGTTLFWCYL+KPNF V+FES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

XP_008462114.1 PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]4.0e-2566.32Show/hide
Query:  LLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LL+L A+VVVQPC A   +P+P P   +HVV+GLSN+TL VHCKS+DDDL    LV +G EF WTF+V+ FG TLFWCYLEKPNF+VSFES+WVE
Subjt:  LLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

TrEMBL top hitse value%identityAlignment
A0A1S3CEQ0 S-protein homolog1.9e-2869.79Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LLL+L A+V+VQP  A   +PLPLP   +HVV+GL N TLFVHCKSKDDDL NH+L  +G E QWTFKVN FGTTLFWCYL+KPNF V+FES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

A0A1S3CG89 S-protein homolog1.9e-2566.32Show/hide
Query:  LLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        LL+L A+VVVQPC A   +P+P P   +HVV+GLSN+TL VHCKS+DDDL    LV +G EF WTF+V+ FG TLFWCYLEKPNF+VSFES+WVE
Subjt:  LLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

A0A5A7VL75 S-protein homolog3.1e-3171.88Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE
        +LL+L A+ VVQPC A   +PLPLP  R+HVV+GL+N+TL VHCKSKDDDL  H+LV +G+EFQWTFKVN FGTTLFWCYL+KPNF+VSFES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYWVE

A0A6J1CPC6 S-protein homolog3.4e-2261.46Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVNF-GTTLFWCYLEKPNFNVSFESYWVE
        + L+     V+Q   A  L    LP   +HVV+GLS  TLFVHCKSKDDDL  H+LV RGDEFQWTF+VNF  TTL+WCYL+KPN +VSFES+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVNF-GTTLFWCYLEKPNFNVSFESYWVE

A0A6J1DPJ1 S-protein homolog3.1e-2358.76Show/hide
Query:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVNF-GTTLFWCYLEKPNFNVSFESYWVE
        LL+    LVVV+P +  + +P+PL    +HVV+GLSN+ TLFVHCKSKDDDL  H L+ RGDE QWTF++NF  TTL+WC++ KPN +VSF+S+WVE
Subjt:  LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVNF-GTTLFWCYLEKPNFNVSFESYWVE

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 22.5e-0641.67Show/hide
Query:  PLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTF-KVNFGTTLFWCYLEKPNFNVSFESY
        P   R V + + L N  TL  HCKSKDDDL N +L   G+ + ++F +  FG TL++C    PN + SF+ Y
Subjt:  PLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTF-KVNFGTTLFWCYLEKPNFNVSFESY

F4JLS0 S-protein homolog 17.1e-0939.24Show/hide
Query:  EVLIPLPLPTRRVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW
        ++++P  +   +V VV+GL + +TLF+HCKSK+DDL   +L  R + F W F  N   +T FWCY+ K N +++   +W
Subjt:  EVLIPLPLPTRRVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW

P0DN93 S-protein homolog 293.1e-0440.28Show/hide
Query:  PLPTRRVHVVHGLS-NDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESY
        P     V V + +S   TL + C+SKDDDL  H L+H G  F W F+ + F TTLF C     N    F++Y
Subjt:  PLPTRRVHVVHGLS-NDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESY

Q2HQ46 S-protein homolog 741.0e-0741.18Show/hide
Query:  RVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW
        +V V +GL + +TLF+HCKSK++DL + +L    D F W F  N   +TLFWCY+ K + +++ + +W
Subjt:  RVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW

Q9FI84 S-protein homolog 276.9e-0444.26Show/hide
Query:  PLPLPTRRVHVVHGLSNDTLF-VHCKSKDDDLSNHSLVHR-GDEFQWTFKVNF-GTTLFWC
        P+  P  R+ V +  +ND L  +HCKSKDDDL  H  +H+ G+ + W F VNF  +TL++C
Subjt:  PLPLPTRRVHVVHGLSNDTLF-VHCKSKDDDLSNHSLVHR-GDEFQWTFKVNF-GTTLFWC

Arabidopsis top hitse value%identityAlignment
AT2G06090.1 Plant self-incompatibility protein S1 family2.9e-0539.19Show/hide
Query:  PTRRVHVVHGLSN--DTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEK---PNFNVSFESY
        P  ++H  +  S   D L VHCKSKDDDL  H+ V R  E+ + F+ + FG T F+C L       ++V+F +Y
Subjt:  PTRRVHVVHGLSN--DTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEK---PNFNVSFESY

AT4G16195.1 Plant self-incompatibility protein S1 family1.8e-0741.67Show/hide
Query:  PLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTF-KVNFGTTLFWCYLEKPNFNVSFESY
        P   R V + + L N  TL  HCKSKDDDL N +L   G+ + ++F +  FG TL++C    PN + SF+ Y
Subjt:  PLPTRRVHVVHGLSND-TLFVHCKSKDDDLSNHSLVHRGDEFQWTF-KVNFGTTLFWCYLEKPNFNVSFESY

AT4G16295.1 S-protein homologue 15.1e-1039.24Show/hide
Query:  EVLIPLPLPTRRVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW
        ++++P  +   +V VV+GL + +TLF+HCKSK+DDL   +L  R + F W F  N   +T FWCY+ K N +++   +W
Subjt:  EVLIPLPLPTRRVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW

AT4G29035.1 Plant self-incompatibility protein S1 family7.3e-0941.18Show/hide
Query:  RVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW
        +V V +GL + +TLF+HCKSK++DL + +L    D F W F  N   +TLFWCY+ K + +++ + +W
Subjt:  RVHVVHGL-SNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVN-FGTTLFWCYLEKPNFNVSFESYW

AT5G06020.1 Plant self-incompatibility protein S1 family4.9e-0544.26Show/hide
Query:  PLPLPTRRVHVVHGLSNDTLF-VHCKSKDDDLSNHSLVHR-GDEFQWTFKVNF-GTTLFWC
        P+  P  R+ V +  +ND L  +HCKSKDDDL  H  +H+ G+ + W F VNF  +TL++C
Subjt:  PLPLPTRRVHVVHGLSNDTLF-VHCKSKDDDLSNHSLVHR-GDEFQWTFKVNF-GTTLFWC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGTTGCTTCTCTTGGCGGCTCTTGTAGTGGTTCAACCATGTATGGCGGAGGTGCTCATTCCACTGCCACTCCCGACAAGGCGTGTTCATGTGGTTCACGGACTGAGCAA
CGATACCCTTTTCGTGCATTGTAAGTCCAAGGACGATGATTTGAGCAACCATAGTTTGGTCCACCGTGGAGATGAATTCCAATGGACTTTTAAGGTAAATTTTGGAACAA
CGCTGTTCTGGTGCTACTTGGAAAAACCAAATTTCAATGTGTCATTCGAATCGTACTGGGTTGAG
mRNA sequenceShow/hide mRNA sequence
CTGTTGCTTCTCTTGGCGGCTCTTGTAGTGGTTCAACCATGTATGGCGGAGGTGCTCATTCCACTGCCACTCCCGACAAGGCGTGTTCATGTGGTTCACGGACTGAGCAA
CGATACCCTTTTCGTGCATTGTAAGTCCAAGGACGATGATTTGAGCAACCATAGTTTGGTCCACCGTGGAGATGAATTCCAATGGACTTTTAAGGTAAATTTTGGAACAA
CGCTGTTCTGGTGCTACTTGGAAAAACCAAATTTCAATGTGTCATTCGAATCGTACTGGGTTGAG
Protein sequenceShow/hide protein sequence
LLLLLAALVVVQPCMAEVLIPLPLPTRRVHVVHGLSNDTLFVHCKSKDDDLSNHSLVHRGDEFQWTFKVNFGTTLFWCYLEKPNFNVSFESYWVE