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MS002488 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002488
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-protein homolog
Genome locationscaffold318:508775..509215
RNA-Seq ExpressionMS002488
SyntenyMS002488
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646235.1 hypothetical protein Csa_015792, partial [Cucumis sativus]7.5e-4765.6Show/hide
Query:  FVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGS-ASFDVFWREVDHLWLHYRCTND-GTC
        FV A+ P   V+KWH+HV+NGLSN  L AHCKSRDTD+GE  ++ G+EIQWSFKENV+G+TLFWCF++   GS +SF+VFW E  H WLHYRCT D GTC
Subjt:  FVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGS-ASFDVFWREVDHLWLHYRCTND-GTC

Query:  IWTAKDDGIYIRNIPDNLDELVHKW
         W AKDDGIY+RNIPD++DE +H+W
Subjt:  IWTAKDDGIYIRNIPDNLDELVHKW

XP_022143724.1 S-protein homolog 1-like [Momordica charantia]1.5e-8299.31Show/hide
Query:  MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWR
        MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKK GGSASFDVFWR
Subjt:  MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWR

Query:  EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS
        EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS
Subjt:  EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS

XP_022148919.1 S-protein homolog 1-like [Momordica charantia]3.0e-4360.81Show/hide
Query:  NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSAS
        ++VLL VLA+L V   Q  +    +AL   P  +    WH+HVVNGLS  +LF HCKS+D D+G HNL RG EIQWSF ENVWGTTLFWCFL+K G +AS
Subjt:  NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSAS

Query:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
        FDVFW E  H WLH+RC    TCIW AKDDGIY+RN  D++DEL+HKW
Subjt:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

XP_022155194.1 S-protein homolog 1-like [Momordica charantia]1.5e-4260.56Show/hide
Query:  VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREV
        +VLL     L V +P V AL     +DKW++HVVNGLS NATLF HCKS+D DLG H+L  RG E+QW+F+ N W TTL+WCF+ K     SFD FW E 
Subjt:  VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREV

Query:  DHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS
         H+WL YRC  DG CIWTAKDDGIY+RNIP+N DELVHKW +
Subjt:  DHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS

XP_038896414.1 S-protein homolog 1-like [Benincasa hispida]1.2e-5266.22Show/hide
Query:  MGAN----VVLLAVLAALTVAQ-PFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGS-AS
        MG N    VVL++VL  +   Q  FV A+ P  +VDKWHVHV+NGLSN  LF HCKSRDTD+GE  +N GAEIQWSFKENVWGTTLFWCF+K   GS AS
Subjt:  MGAN----VVLLAVLAALTVAQ-PFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGS-AS

Query:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
        F+VFW E  H WLHYRCT  GTC WTAKDDGIY+RNIPD ++E +H+W
Subjt:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

TrEMBL top hitse value%identityAlignment
A0A6J1CPC6 S-protein homolog3.0e-4154.48Show/hide
Query:  ETMGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDV
        +T    VV+  V     V Q    A   +  + KWH+HVVNGLS  TLF HCKS+D DLG HNL  RG E QW+F+ N W TTL+WC+LKK     SF+ 
Subjt:  ETMGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDV

Query:  FWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
        FW E  H+WL YRCT D  CIWTAKDDGIY+RN PD +DE +H+W
Subjt:  FWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

A0A6J1CQ65 S-protein homolog7.0e-8399.31Show/hide
Query:  MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWR
        MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKK GGSASFDVFWR
Subjt:  MGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWR

Query:  EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS
        EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS
Subjt:  EVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS

A0A6J1D5G6 S-protein homolog1.4e-4360.81Show/hide
Query:  NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSAS
        ++VLL VLA+L V   Q  +    +AL   P  +    WH+HVVNGLS  +LF HCKS+D D+G HNL RG EIQWSF ENVWGTTLFWCFL+K G +AS
Subjt:  NVVLLAVLAALTVA--QPFV----EALAPTPYVD---KWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSAS

Query:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
        FDVFW E  H WLH+RC    TCIW AKDDGIY+RN  D++DEL+HKW
Subjt:  FDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

A0A6J1DPJ1 S-protein homolog7.1e-4360.56Show/hide
Query:  VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREV
        +VLL     L V +P V AL     +DKW++HVVNGLS NATLF HCKS+D DLG H+L  RG E+QW+F+ N W TTL+WCF+ K     SFD FW E 
Subjt:  VVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLS-NATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREV

Query:  DHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS
         H+WL YRC  DG CIWTAKDDGIY+RNIP+N DELVHKW +
Subjt:  DHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTS

A0A6J1H9E9 S-protein homolog1.9e-4056.74Show/hide
Query:  ANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWRE
        A   LL +LA+  + QP   A+   P +  W VHVVN L+NATLF HCKS+D DLG HNL   G+E QWSFK N+W TTLFWC L+K     SF+ FW E
Subjt:  ANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNL-NRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWRE

Query:  VDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
          H+WL+YRC + G CIWTA+DDG+Y+RN PD++DE VHKW
Subjt:  VDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

SwissProt top hitse value%identityAlignment
F2Q9V4 S-protein homolog 62.9e-0936.73Show/hide
Query:  LFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWC-FLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW
        L  HCKSRD D G H L +G    W F  N   +TL++C F ++      FD++    D      RC N   C W AK+DGIY        + L +KW
Subjt:  LFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWC-FLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKW

F4JLQ5 S-protein homolog 21.1e-0832.14Show/hide
Query:  VHVVNGLSN-ATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD
        V + N L N  TL  HCKS+D DLG   L  G    +SF    +G TL++C       S SFD++    D      +C +D  C+W  + +G    N   
Subjt:  VHVVNGLSN-ATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD

Query:  NLDELVHKWTSS
           +L + W  S
Subjt:  NLDELVHKWTSS

F4JLS0 S-protein homolog 12.7e-2344.83Show/hide
Query:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI
        P + +W V VVNGL+   TLF HCKS++ DLGE NL       W+F EN+  +T FWC++ K  G  + +VFW   D + L +RC     CIWTAK DG+
Subjt:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI

Query:  YIRNIPDNLDELVHKW
        Y+ N     D L  KW
Subjt:  YIRNIPDNLDELVHKW

Q2HQ46 S-protein homolog 747.9e-2343.22Show/hide
Query:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI
        P + +W V V NGL+   TLF HCKS++ DLG+ NL       W+F EN+  +TLFWC++ K  G  +  VFW   D + L +RC +   C+WTAK+DG+
Subjt:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI

Query:  YIRNIPDNLDELVHKWTS
        Y+ N     D L  KW S
Subjt:  YIRNIPDNLDELVHKWTS

Q9FMQ4 S-protein homolog 31.3e-0931.25Show/hide
Query:  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD
        V + N L +  TL  HCKS D DLG   L       + F+ ++ GTTLF+C     G S  FD++  + D +  H  C N   CIW     G  + +  D
Subjt:  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD

Query:  NLDELVHKWTSS
        +   + + W  +
Subjt:  NLDELVHKWTSS

Arabidopsis top hitse value%identityAlignment
AT1G28305.1 Plant self-incompatibility protein S1 family8.4e-1232.48Show/hide
Query:  VHVVNGL----SNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGG---SASFDVFWREVDHLWLHYR--CTNDGTCIWTAKDDG
        +H+ N L     ++ LF  CKS   D+G+H +  G   Q+  ++N W TTLFWC  +          FDV+          Y+      GT  WTA++DG
Subjt:  VHVVNGL----SNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGG---SASFDVFWREVDHLWLHYR--CTNDGTCIWTAKDDG

Query:  IYIRNIPDNLDELVHKW
        IY R +       VH W
Subjt:  IYIRNIPDNLDELVHKW

AT4G16295.1 S-protein homologue 11.9e-2444.83Show/hide
Query:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI
        P + +W V VVNGL+   TLF HCKS++ DLGE NL       W+F EN+  +T FWC++ K  G  + +VFW   D + L +RC     CIWTAK DG+
Subjt:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI

Query:  YIRNIPDNLDELVHKW
        Y+ N     D L  KW
Subjt:  YIRNIPDNLDELVHKW

AT4G29035.1 Plant self-incompatibility protein S1 family5.6e-2443.22Show/hide
Query:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI
        P + +W V V NGL+   TLF HCKS++ DLG+ NL       W+F EN+  +TLFWC++ K  G  +  VFW   D + L +RC +   C+WTAK+DG+
Subjt:  PYVDKWHVHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGI

Query:  YIRNIPDNLDELVHKWTS
        Y+ N     D L  KW S
Subjt:  YIRNIPDNLDELVHKWTS

AT5G04347.1 Plant self-incompatibility protein S1 family3.2e-1131.19Show/hide
Query:  VVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGG---SASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD
        V N L+N  L   C+S+D +LG+H L  G   + +F +NVW  TLFWC L K        +FD +  +       ++       +W A++DGIY    P+
Subjt:  VVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGG---SASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD

Query:  NLDELVHKW
           +  + W
Subjt:  NLDELVHKW

AT5G12060.1 Plant self-incompatibility protein S1 family9.3e-1131.25Show/hide
Query:  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD
        V + N L +  TL  HCKS D DLG   L       + F+ ++ GTTLF+C     G S  FD++  + D +  H  C N   CIW     G  + +  D
Subjt:  VHVVNGLSNA-TLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLHYRCTNDGTCIWTAKDDGIYIRNIPD

Query:  NLDELVHKWTSS
        +   + + W  +
Subjt:  NLDELVHKWTSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGACCATGGGTGCAAATGTGGTTTTGTTAGCTGTGTTGGCAGCTCTAACGGTGGCTCAGCCATTCGTGGAGGCGTTGGCGCCTACACCGTATGTTGACAAGTGGCACGT
TCATGTGGTTAATGGGTTGAGCAATGCGACGTTGTTTGCACACTGCAAATCTAGAGATACCGATTTGGGAGAACATAACTTAAATCGTGGAGCTGAGATTCAATGGAGCT
TTAAGGAAAACGTCTGGGGAACAACATTATTTTGGTGCTTCTTGAAAAAGTCGGGTGGCAGTGCCTCATTTGACGTCTTCTGGCGTGAGGTTGACCATCTTTGGCTCCAT
TACAGGTGCACCAATGATGGAACTTGTATTTGGACTGCCAAAGATGATGGGATTTACATAAGAAACATTCCTGATAATCTTGATGAACTGGTTCATAAGTGGACCAGTTC
T
mRNA sequenceShow/hide mRNA sequence
GAGACCATGGGTGCAAATGTGGTTTTGTTAGCTGTGTTGGCAGCTCTAACGGTGGCTCAGCCATTCGTGGAGGCGTTGGCGCCTACACCGTATGTTGACAAGTGGCACGT
TCATGTGGTTAATGGGTTGAGCAATGCGACGTTGTTTGCACACTGCAAATCTAGAGATACCGATTTGGGAGAACATAACTTAAATCGTGGAGCTGAGATTCAATGGAGCT
TTAAGGAAAACGTCTGGGGAACAACATTATTTTGGTGCTTCTTGAAAAAGTCGGGTGGCAGTGCCTCATTTGACGTCTTCTGGCGTGAGGTTGACCATCTTTGGCTCCAT
TACAGGTGCACCAATGATGGAACTTGTATTTGGACTGCCAAAGATGATGGGATTTACATAAGAAACATTCCTGATAATCTTGATGAACTGGTTCATAAGTGGACCAGTTC
T
Protein sequenceShow/hide protein sequence
ETMGANVVLLAVLAALTVAQPFVEALAPTPYVDKWHVHVVNGLSNATLFAHCKSRDTDLGEHNLNRGAEIQWSFKENVWGTTLFWCFLKKSGGSASFDVFWREVDHLWLH
YRCTNDGTCIWTAKDDGIYIRNIPDNLDELVHKWTSS