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MS002489 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002489
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-protein homolog
Genome locationscaffold318:512477..512908
RNA-Seq ExpressionMS002489
SyntenyMS002489
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016902699.1 PREDICTED: uncharacterized protein LOC107991826 [Cucumis melo]1.4e-5064.08Show/hide
Query:  LQAMEKHFLVFFLVF--SLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEA
        +++M+ HFLVF  +F  SL IV+P +A   ++RWHIH+VNGL+N Q L VHC+SKD+DLG+ YL+ GTE+NWTF++NFWDTTLFWCYLQKP+ +S SFEA
Subjt:  LQAMEKHFLVFFLVF--SLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEA

Query:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH
        FWVE+ +IWL Y+C  +NCIW AKDDGIYLKDN A +D L+H
Subjt:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH

XP_022143772.1 S-protein homolog 74-like [Momordica charantia]6.4e-5971.53Show/hide
Query:  AIYLQAMEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFE
        A+ +++ +KHFLVF LV SLVI+EP EAFS +++W IHVVNGL+N QTL VHCKSKDNDLGEH LN GTE+NWTFRVN W+TTLFWCYL KPDGKS+SF+
Subjt:  AIYLQAMEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFE

Query:  AFWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
         FWVEK +IWL Y+C  +NCIW AKDDGIYL+DN  Q+DIL+HE
Subjt:  AFWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

XP_022143780.1 S-protein homolog 1-like [Momordica charantia]3.1e-4563.24Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST
        KHFLVF  V SL IVE  EA   + +W IHV N L+N Q L VHCKSK++DLGEH L+ GTE+NW FRVN WDTTL+WCYLQKP+G+S SF+AFWVEK +
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST

Query:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
        IWL YKC  +NC W AKDDGIYL++N   +D+ +H+
Subjt:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

XP_022143829.1 S-protein homolog 74-like [Momordica charantia]4.1e-4560.87Show/hide
Query:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK
        ++KHFLV  L  SL IVEP +    ++RW+IHVVNGL N + L VHCKS+D+DLGE  L  G E++WTFRVN  DTTLFWC+L+KPD +S SF+AFWVEK
Subjt:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK

Query:  STIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
        ++IWL Y+C   NCIW AKDDG+YL+DN  Q+D+L+H+
Subjt:  STIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

XP_031745090.1 S-protein homolog 1-like [Cucumis sativus]4.1e-4561.87Show/hide
Query:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK
        M+K  +V   V  L I+E  +A   +++WHIHVVNGL+N Q LL HCKSKDNDLGE  L  GTE+NW FRVNFW+TTLFWCYLQKP+G+ SSFE+FW+E 
Subjt:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK

Query:  STIWLVYKCSGNNCIWIAKDDGIYLKDN-EAQKDILLHE
         ++WL   C   NCIW AKDDGIYLKDN +  KDIL+H+
Subjt:  STIWLVYKCSGNNCIWIAKDDGIYLKDN-EAQKDILLHE

TrEMBL top hitse value%identityAlignment
A0A1S4E390 S-protein homolog7.0e-5164.08Show/hide
Query:  LQAMEKHFLVFFLVF--SLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEA
        +++M+ HFLVF  +F  SL IV+P +A   ++RWHIH+VNGL+N Q L VHC+SKD+DLG+ YL+ GTE+NWTF++NFWDTTLFWCYLQKP+ +S SFEA
Subjt:  LQAMEKHFLVFFLVF--SLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEA

Query:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH
        FWVE+ +IWL Y+C  +NCIW AKDDGIYLKDN A +D L+H
Subjt:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH

A0A6J1CPR8 S-protein homolog1.5e-4563.24Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST
        KHFLVF  V SL IVE  EA   + +W IHV N L+N Q L VHCKSK++DLGEH L+ GTE+NW FRVN WDTTL+WCYLQKP+G+S SF+AFWVEK +
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST

Query:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
        IWL YKC  +NC W AKDDGIYL++N   +D+ +H+
Subjt:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

A0A6J1CQH6 S-protein homolog2.0e-4560.87Show/hide
Query:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK
        ++KHFLV  L  SL IVEP +    ++RW+IHVVNGL N + L VHCKS+D+DLGE  L  G E++WTFRVN  DTTLFWC+L+KPD +S SF+AFWVEK
Subjt:  MEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEK

Query:  STIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
        ++IWL Y+C   NCIW AKDDG+YL+DN  Q+D+L+H+
Subjt:  STIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

A0A6J1CRU0 S-protein homolog3.1e-5971.53Show/hide
Query:  AIYLQAMEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFE
        A+ +++ +KHFLVF LV SLVI+EP EAFS +++W IHVVNGL+N QTL VHCKSKDNDLGEH LN GTE+NWTFRVN W+TTLFWCYL KPDGKS+SF+
Subjt:  AIYLQAMEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFE

Query:  AFWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE
         FWVEK +IWL Y+C  +NCIW AKDDGIYL+DN  Q+DIL+HE
Subjt:  AFWVEKSTIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE

A0A6J1HAC3 S-protein homolog4.7e-3956.3Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST
        K+ ++ FLV S + +  ++ FS   +W IH+ N L+N Q + VHCKSKDNDLGEH L  GTE+ W F+VNFWDTTLFWCYL+KP+G   +F+AFWVEK T
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKST

Query:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH
         WL  KC GN C W A+D+GIYLKDN    D  +H
Subjt:  IWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH

SwissProt top hitse value%identityAlignment
F2Q9V4 S-protein homolog 61.2e-1039.53Show/hide
Query:  NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIY
        N   L VHCKS+D+D G H L  G  Y W F VNF ++TL++C   +   K   F+ +   + +     +C   NC W AK+DGIY
Subjt:  NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIY

F4JLS0 S-protein homolog 11.9e-2140.91Show/hide
Query:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL
        +  W + VVNGLT  +TL +HCKSK++DLGE  L     ++W F  N   +T FWCY+ K +G   +   FW     + L ++C   NCIW AK DG+YL
Subjt:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL

Query:  KDNEAQKDIL
         ++ + +D+L
Subjt:  KDNEAQKDIL

P0DN92 S-protein homolog 248.0e-1233.09Show/hide
Query:  FLVFFLVFSLVIVEPAEAFSSMQ--RWHIHVVNGLTNAQTLL-VHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKS
        F+V  +V SL+  E  +   + +  R H+  V    +   LL +HCKS+D+DLG H L  G  + W F VNF  +TL++C   +   K   FE +   + 
Subjt:  FLVFFLVFSLVIVEPAEAFSSMQ--RWHIHVVNGLTNAQTLL-VHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKS

Query:  TIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH
             Y+C+  NC W A+ DGIY    +  K  L +
Subjt:  TIWLVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLH

Q2HQ46 S-protein homolog 746.5e-2240.91Show/hide
Query:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL
        +  W + V NGLT  +TL +HCKSK+NDLG+  L     ++W F  N   +TLFWCY+ K DG   + + FW     + L ++C   NC+W AK+DG+YL
Subjt:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL

Query:  KDNEAQKDIL
         ++   +D+L
Subjt:  KDNEAQKDIL

Q9LW22 S-protein homolog 212.3e-1135.66Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLT--NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQK-PDGKS----SSFEA
        K+  +F  V  L ++       S     I V N L   N   L VHCKSK+ND+G  YL  G   +++F+ NFW TT FWC L K PD K     ++++A
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLT--NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQK-PDGKS----SSFEA

Query:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIY
                  ++   G++  W+A+DDGIY
Subjt:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIY

Arabidopsis top hitse value%identityAlignment
AT1G28305.1 Plant self-incompatibility protein S1 family7.0e-1131.3Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQ---TLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWC-YLQKPDGKSSSFEAFWV
        K+  VF   + L I+      ++     +H+ N L   Q    L V CKS   D+G+HY+  G  Y +  R NFW TTLFWC +   PD ++      + 
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQ---TLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWC-YLQKPDGKSSSFEAFWV

Query:  EKSTIWLVYKCSGNNCIWIAKDDGIYLKDNE
         K  +       G    W A++DGIY + N+
Subjt:  EKSTIWLVYKCSGNNCIWIAKDDGIYLKDNE

AT3G26880.1 Plant self-incompatibility protein S1 family1.7e-1235.66Show/hide
Query:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLT--NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQK-PDGKS----SSFEA
        K+  +F  V  L ++       S     I V N L   N   L VHCKSK+ND+G  YL  G   +++F+ NFW TT FWC L K PD K     ++++A
Subjt:  KHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLT--NAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQK-PDGKS----SSFEA

Query:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIY
                  ++   G++  W+A+DDGIY
Subjt:  FWVEKSTIWLVYKCSGNNCIWIAKDDGIY

AT4G16295.1 S-protein homologue 11.4e-2240.91Show/hide
Query:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL
        +  W + VVNGLT  +TL +HCKSK++DLGE  L     ++W F  N   +T FWCY+ K +G   +   FW     + L ++C   NCIW AK DG+YL
Subjt:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL

Query:  KDNEAQKDIL
         ++ + +D+L
Subjt:  KDNEAQKDIL

AT4G29035.1 Plant self-incompatibility protein S1 family4.6e-2340.91Show/hide
Query:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL
        +  W + V NGLT  +TL +HCKSK+NDLG+  L     ++W F  N   +TLFWCY+ K DG   + + FW     + L ++C   NC+W AK+DG+YL
Subjt:  MQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVYKCSGNNCIWIAKDDGIYL

Query:  KDNEAQKDIL
         ++   +D+L
Subjt:  KDNEAQKDIL

AT5G04350.1 Plant self-incompatibility protein S1 family6.1e-1536.36Show/hide
Query:  VFSLVI---VEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVY
        +FS+VI   +  + AF  +    + + N L +++ L VHC+SKD+DLGEH L  G +Y +TF  N W TT F C  Q   G +      +V   T W   
Subjt:  VFSLVI---VEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIWLVY

Query:  KCSGNNCIWIAKDDGIYLKDN
        K    +C WI ++DGIY   +
Subjt:  KCSGNNCIWIAKDDGIYLKDN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAATATATCTCCAAGCAATGGAAAAGCACTTTTTGGTTTTCTTTCTCGTCTTCTCACTGGTCATAGTTGAACCAGCGGAAGCTTTTTCCTCTATGCAAAGATGGCACAT
CCACGTTGTAAATGGGCTAACCAACGCCCAAACTCTCTTAGTTCACTGCAAATCGAAGGACAACGATTTAGGTGAACATTACCTCAATGGTGGAACTGAATACAACTGGA
CTTTTAGAGTGAACTTTTGGGACACGACATTGTTCTGGTGTTACTTGCAAAAACCCGATGGAAAATCTTCGTCATTTGAAGCCTTTTGGGTCGAGAAGTCAACGATTTGG
CTCGTTTACAAATGTTCAGGTAACAACTGTATTTGGATAGCAAAAGATGATGGAATTTATCTAAAGGACAACGAAGCTCAAAAGGATATTTTACTTCACGAG
mRNA sequenceShow/hide mRNA sequence
GCAATATATCTCCAAGCAATGGAAAAGCACTTTTTGGTTTTCTTTCTCGTCTTCTCACTGGTCATAGTTGAACCAGCGGAAGCTTTTTCCTCTATGCAAAGATGGCACAT
CCACGTTGTAAATGGGCTAACCAACGCCCAAACTCTCTTAGTTCACTGCAAATCGAAGGACAACGATTTAGGTGAACATTACCTCAATGGTGGAACTGAATACAACTGGA
CTTTTAGAGTGAACTTTTGGGACACGACATTGTTCTGGTGTTACTTGCAAAAACCCGATGGAAAATCTTCGTCATTTGAAGCCTTTTGGGTCGAGAAGTCAACGATTTGG
CTCGTTTACAAATGTTCAGGTAACAACTGTATTTGGATAGCAAAAGATGATGGAATTTATCTAAAGGACAACGAAGCTCAAAAGGATATTTTACTTCACGAG
Protein sequenceShow/hide protein sequence
AIYLQAMEKHFLVFFLVFSLVIVEPAEAFSSMQRWHIHVVNGLTNAQTLLVHCKSKDNDLGEHYLNGGTEYNWTFRVNFWDTTLFWCYLQKPDGKSSSFEAFWVEKSTIW
LVYKCSGNNCIWIAKDDGIYLKDNEAQKDILLHE