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MS002496 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002496
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS-protein homolog
Genome locationscaffold318:535311..535736
RNA-Seq ExpressionMS002496
SyntenyMS002496
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139726.1 S-protein homolog 74-like [Cucumis sativus]2.7e-4158.33Show/hide
Query:  RYVAVLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWP
        R V V     +ALVGA  +P          R+ VH+VN L+N  L VHC+SKDNDLGYQ L+  G DF W+F+VN++GTTLFWC L+K  AY SF++FWP
Subjt:  RYVAVLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWP

Query:  ESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW
        ES+N WLR RC    +GNCIWTAKDDGIYL+N P NV+E VHKW
Subjt:  ESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW

XP_022143724.1 S-protein homolog 1-like [Momordica charantia]7.3e-3955.94Show/hide
Query:  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK
        VLL V+ AL  A   PF           +W+VH+VN L+N  L  HCKS+D DLG   L  GA+  WSF+ NVWGTTLFWC L+K    ASFD FW E  
Subjt:  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK

Query:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        + WL YRCT+  +G CIWTAKDDGIY++NIP+N++ELVHKWTS
Subjt:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

XP_022143839.1 S-protein homolog 1-like [Momordica charantia]4.6e-5769.13Show/hide
Query:  HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT
        +PTNR+VAVLLLV  ALVGA   P G        RW+VH+VN LNN+ L VHCKSKD+DLGYQRLV GADF WSF+VN WGTTLFWCNL K  AY +F+ 
Subjt:  HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT

Query:  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        FWPES+N WLR RC + TEG+CIWTAKDDGIYL+NIP N EEL+HKW S
Subjt:  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

XP_022143852.1 S-protein homolog 74-like [Momordica charantia]5.5e-7995.77Show/hide
Query:  KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
        K+PTNRYV VLLLVMVALVGASGLP GRWNVHIVNKLNNDVLAVHCKSKDNDL YQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
Subjt:  KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN

Query:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        QWLRYRCTDRT+GNCIWTAKDDGIYLKNIP+NVEELVHKWTS
Subjt:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

XP_022991767.1 S-protein homolog 74-like [Cucurbita maxima]5.6e-3957.14Show/hide
Query:  VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
        V VLLL MVA VGA   G+ +     R+ VH+ N L+   L VHC+SKD+DLG   L   G DF W+F+VN WGTTLFWC L++  AY +F+TFWPESKN
Subjt:  VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN

Query:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW
         WLR RC + T+G C+W AKDDGIYL N P N +EL+HKW
Subjt:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW

TrEMBL top hitse value%identityAlignment
A0A6J1CQ65 S-protein homolog3.5e-3955.94Show/hide
Query:  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK
        VLL V+ AL  A   PF           +W+VH+VN L+N  L  HCKS+D DLG   L  GA+  WSF+ NVWGTTLFWC L+K    ASFD FW E  
Subjt:  VLLLVMVALVGASGLPF----------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK

Query:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        + WL YRCT+  +G CIWTAKDDGIY++NIP+N++ELVHKWTS
Subjt:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

A0A6J1CQI8 S-protein homolog2.2e-5769.13Show/hide
Query:  HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT
        +PTNR+VAVLLLV  ALVGA   P G        RW+VH+VN LNN+ L VHCKSKD+DLGYQRLV GADF WSF+VN WGTTLFWCNL K  AY +F+ 
Subjt:  HPTNRYVAVLLLVMVALVGASGLPFG--------RWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDT

Query:  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        FWPES+N WLR RC + TEG+CIWTAKDDGIYL+NIP N EEL+HKW S
Subjt:  FWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

A0A6J1CS23 S-protein homolog2.7e-7995.77Show/hide
Query:  KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
        K+PTNRYV VLLLVMVALVGASGLP GRWNVHIVNKLNNDVLAVHCKSKDNDL YQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
Subjt:  KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN

Query:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS
        QWLRYRCTDRT+GNCIWTAKDDGIYLKNIP+NVEELVHKWTS
Subjt:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS

A0A6J1F497 S-protein homolog4.6e-3954.93Show/hide
Query:  VAVLLLVMVALVGAS-------GLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK
        + V  L  VALVGA         L   R+ +H+VN L+N  L VHC+SKD+DLGY  L+  G D+ W+F+VN WGTTLFWC ++   AY SF++FWPES+
Subjt:  VAVLLLVMVALVGAS-------GLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESK

Query:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWT
        + WLR RC   T G CIWTAKDDGIYL+N   NV+EL+HKWT
Subjt:  NQWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKWT

A0A6J1JMS5 S-protein homolog2.7e-3957.14Show/hide
Query:  VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN
        V VLLL MVA VGA   G+ +     R+ VH+ N L+   L VHC+SKD+DLG   L   G DF W+F+VN WGTTLFWC L++  AY +F+TFWPESKN
Subjt:  VAVLLLVMVALVGAS--GLPF----GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLV-PGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKN

Query:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW
         WLR RC + T+G C+W AKDDGIYL N P N +EL+HKW
Subjt:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW

SwissProt top hitse value%identityAlignment
F2Q9V4 S-protein homolog 62.5e-1029.29Show/hide
Query:  VLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNL-QKSSAYASFDTFWPESKN
        ++ +V+++L+G   L          G     ++   N+ +L VHCKS+D+D G+  L  G  + W F VN   +TL++C   Q+      FD +     +
Subjt:  VLLLVMVALVGASGLPF--------GRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNL-QKSSAYASFDTFWPESKN

Query:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW
             RC      NC W AK+DGIY          L +KW
Subjt:  QWLRYRCTDRTEGNCIWTAKDDGIYLKNIPNNVEELVHKW

F4JLS0 S-protein homolog 18.2e-1738.94Show/hide
Query:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK
        W V +VN L   + L +HCKSK++DLG   L     F W+F  N+  +T FWC + K + + + + FW +     L +RC  +   NCIWTAK DG+YL 
Subjt:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK

Query:  NIPNNVEELVHKW
        N  +  + L  KW
Subjt:  NIPNNVEELVHKW

O23020 S-protein homolog 54.3e-1035.85Show/hide
Query:  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIW
        G  GL PF R   V + N +    L +HCKSK +DLG   +    ++H+ F+ N+W +TLF+C+ Q  S + SFD  +   ++Q +   C D     C W
Subjt:  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIW

Query:  TAKDDG
          K DG
Subjt:  TAKDDG

Q2HQ46 S-protein homolog 748.2e-1739.13Show/hide
Query:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK
        W V + N L   + L +HCKSK+NDLG   L     F W+F  N+  +TLFWC + K   + +   FW +     L +RC  +   NC+WTAK+DG+YL 
Subjt:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK

Query:  NIPNNVEELVHKWTS
        N     + L  KW S
Subjt:  NIPNNVEELVHKWTS

Q9LW22 S-protein homolog 217.2e-1341.3Show/hide
Query:  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY
        +N  N ++L VHCKSK+ND+G + L  G    +SF+ N WGTT FWCNL K   Y  +      +  Q +     D +  N  W A+DDGIY
Subjt:  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family3.1e-1135.85Show/hide
Query:  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIW
        G  GL PF R   V + N +    L +HCKSK +DLG   +    ++H+ F+ N+W +TLF+C+ Q  S + SFD  +   ++Q +   C D     C W
Subjt:  GASGL-PFGRWN-VHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIW

Query:  TAKDDG
          K DG
Subjt:  TAKDDG

AT3G26880.1 Plant self-incompatibility protein S1 family5.1e-1441.3Show/hide
Query:  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY
        +N  N ++L VHCKSK+ND+G + L  G    +SF+ N WGTT FWCNL K   Y  +      +  Q +     D +  N  W A+DDGIY
Subjt:  VNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIY

AT4G16295.1 S-protein homologue 15.8e-1838.94Show/hide
Query:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK
        W V +VN L   + L +HCKSK++DLG   L     F W+F  N+  +T FWC + K + + + + FW +     L +RC  +   NCIWTAK DG+YL 
Subjt:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK

Query:  NIPNNVEELVHKW
        N  +  + L  KW
Subjt:  NIPNNVEELVHKW

AT4G29035.1 Plant self-incompatibility protein S1 family5.8e-1839.13Show/hide
Query:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK
        W V + N L   + L +HCKSK+NDLG   L     F W+F  N+  +TLFWC + K   + +   FW +     L +RC  +   NC+WTAK+DG+YL 
Subjt:  WNVHIVNKL-NNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDRTEGNCIWTAKDDGIYLK

Query:  NIPNNVEELVHKWTS
        N     + L  KW S
Subjt:  NIPNNVEELVHKWTS

AT5G04347.1 Plant self-incompatibility protein S1 family3.3e-1334.96Show/hide
Query:  FGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKS---SAYASFDTFWPESKNQWL-----RYRCTDRTEGNCIW
        FG   + + N+LNN VL V C+SKD++LG   L  G     +F  NVW  TLFWCNL K      + +FD +    ++QW      RY          +W
Subjt:  FGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKS---SAYASFDTFWPESKNQWL-----RYRCTDRTEGNCIW

Query:  TAKDDGIYLKNIPNNVEELVHKW
         A++DGIY    P    +  + W
Subjt:  TAKDDGIYLKNIPNNVEELVHKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACATCCAACAAATAGGTACGTGGCTGTCTTGTTGCTGGTCATGGTGGCTCTTGTGGGTGCATCAGGGTTACCGTTTGGAAGATGGAATGTTCACATTGTTAATAAGTT
AAACAATGATGTCTTGGCTGTGCACTGCAAGTCGAAAGACAATGATTTGGGCTATCAACGTTTGGTTCCTGGAGCTGATTTCCATTGGAGCTTTCGAGTGAATGTGTGGG
GAACAACCTTATTTTGGTGCAACTTACAAAAGTCAAGTGCCTATGCCTCGTTTGATACATTTTGGCCTGAGTCGAAGAATCAGTGGCTTCGTTATAGGTGCACCGATAGA
ACCGAGGGAAATTGCATTTGGACGGCCAAAGATGACGGAATTTACTTGAAAAACATTCCCAATAATGTTGAAGAGTTGGTTCATAAGTGGACCAGT
mRNA sequenceShow/hide mRNA sequence
AAACATCCAACAAATAGGTACGTGGCTGTCTTGTTGCTGGTCATGGTGGCTCTTGTGGGTGCATCAGGGTTACCGTTTGGAAGATGGAATGTTCACATTGTTAATAAGTT
AAACAATGATGTCTTGGCTGTGCACTGCAAGTCGAAAGACAATGATTTGGGCTATCAACGTTTGGTTCCTGGAGCTGATTTCCATTGGAGCTTTCGAGTGAATGTGTGGG
GAACAACCTTATTTTGGTGCAACTTACAAAAGTCAAGTGCCTATGCCTCGTTTGATACATTTTGGCCTGAGTCGAAGAATCAGTGGCTTCGTTATAGGTGCACCGATAGA
ACCGAGGGAAATTGCATTTGGACGGCCAAAGATGACGGAATTTACTTGAAAAACATTCCCAATAATGTTGAAGAGTTGGTTCATAAGTGGACCAGT
Protein sequenceShow/hide protein sequence
KHPTNRYVAVLLLVMVALVGASGLPFGRWNVHIVNKLNNDVLAVHCKSKDNDLGYQRLVPGADFHWSFRVNVWGTTLFWCNLQKSSAYASFDTFWPESKNQWLRYRCTDR
TEGNCIWTAKDDGIYLKNIPNNVEELVHKWTS