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MS002510 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002510
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 15a
Genome locationscaffold318:643426..643879
RNA-Seq ExpressionMS002510
SyntenyMS002510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OAY64602.1 Mediator of RNA polymerase II transcription subunit 15a [Ananas comosus]3.2e-0440.7Show/hide
Query:  VEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL---CNGERRSRRDRQDE
        V+++    R  V++EL LG V   V  E E  +LAELL +V+L+ V+GA+LP+GG+A    +D +RH L       R+ RR R D+
Subjt:  VEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL---CNGERRSRRDRQDE

PON36104.1 hypothetical protein PanWU01x14_330890 [Parasponia andersonii]3.2e-0448.28Show/hide
Query:  VLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL
        V +EL L  +F +VF +WE  ELAEL  +VK + V+G+LLP+ G A  SF+DY+ + L
Subjt:  VLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL

TrEMBL top hitse value%identityAlignment
A0A0A0K9B0 Uncharacterized protein1.3e-4086.27Show/hide
Query:  MYSTSLRADPAVEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPLCNGERRSRRDRQDEISSPSL
        MYSTSLRA+PAVE VLTRHRPLVLNEL LGWVFR+VF EWEFWELAELLWKVK K VIGALLPQGGYAFSSFKDYKR   CN ERRS  DRQDE SSPSL
Subjt:  MYSTSLRADPAVEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPLCNGERRSRRDRQDEISSPSL

Query:  LR
        LR
Subjt:  LR

A0A199UI83 Mediator of RNA polymerase II transcription subunit 15a1.6e-0440.7Show/hide
Query:  VEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL---CNGERRSRRDRQDE
        V+++    R  V++EL LG V   V  E E  +LAELL +V+L+ V+GA+LP+GG+A    +D +RH L       R+ RR R D+
Subjt:  VEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL---CNGERRSRRDRQDE

A0A2P5AHW0 Uncharacterized protein1.6e-0448.28Show/hide
Query:  VLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL
        V +EL L  +F +VF +WE  ELAEL  +VK + V+G+LLP+ G A  SF+DY+ + L
Subjt:  VLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCGACCTCGTTGCGGGCTGACCCGGCAGTCGAGATGGTCTTGACTCGCCACAGGCCGCTGGTACTCAATGAACTGCCTCTTGGTTGGGTATTCAGGAAAGTCTT
CAGGGAATGGGAGTTTTGGGAGCTGGCAGAATTGCTTTGGAAGGTGAAGCTTAAGCCTGTCATAGGTGCGCTTTTGCCACAGGGAGGCTATGCATTCAGCTCTTTCAAGG
ACTACAAAAGGCACCCCTTATGCAACGGCGAGAGAAGAAGTCGTCGTGATCGGCAAGACGAAATAAGTTCTCCATCACTACTAAGG
mRNA sequenceShow/hide mRNA sequence
ATGTACTCGACCTCGTTGCGGGCTGACCCGGCAGTCGAGATGGTCTTGACTCGCCACAGGCCGCTGGTACTCAATGAACTGCCTCTTGGTTGGGTATTCAGGAAAGTCTT
CAGGGAATGGGAGTTTTGGGAGCTGGCAGAATTGCTTTGGAAGGTGAAGCTTAAGCCTGTCATAGGTGCGCTTTTGCCACAGGGAGGCTATGCATTCAGCTCTTTCAAGG
ACTACAAAAGGCACCCCTTATGCAACGGCGAGAGAAGAAGTCGTCGTGATCGGCAAGACGAAATAAGTTCTCCATCACTACTAAGG
Protein sequenceShow/hide protein sequence
MYSTSLRADPAVEMVLTRHRPLVLNELPLGWVFRKVFREWEFWELAELLWKVKLKPVIGALLPQGGYAFSSFKDYKRHPLCNGERRSRRDRQDEISSPSLLR