CuGenDBv2

Gene ID	MS002532
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribosomal RNA-processing protein 17-like
Genome location	scaffold318:868014..869880
RNA-Seq Expression	MS002532
Synteny	MS002532
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594625.1 hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-62

74.24

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +  DEDEEE+  APISE TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

2.4e-69

80.61

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF-KKKKEEKELVLYGGVLPADWPVDKQND
        MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  +    KK+KEEKELVLYGG+LPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF-KKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        DH  E+EEEK FAPISE TTYDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR KPRSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_022157484.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

8.9e-96

100

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
        MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD

Query:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
Subjt:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

1.0e-62

74.75

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EKELVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +  DEDEEEK  APISE TTYDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LP+TKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

9.0e-64

74.24

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV N+G+EG ELAQ    HIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA +  + +  KK++ EK+LVLYGGVLPAD PVD++ND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        DHE  +EDEEEK  AP SE TTYDSGNIKVTV TSEVSR+E+I PIDKPQT T+QL +KDKKHNLP+TKKKP  KVAKQ+SR K RSKR+K+KG++KK
Subjt:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.7e-60

73.47

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+N+G+EGGELAQ    HIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA  ++  +  KK+K EK+LVLYGGVLPAD  VD QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA-HQITQKGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D EDE+EE    AP SE  TYD+GN+KVTVTTSEVSR+ +I PIDKPQT  +QL+ KDKKHNLPITKKK   KVAKQ+SR K RSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

1.2e-69

80.61

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF-KKKKEEKELVLYGGVLPADWPVDKQND
        MV+N+GDEGGELAQ  G HIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  +    KK+KEEKELVLYGG+LPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGF-KKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        DH  E+EEEK FAPISE TTYDSGNIKVTV TSEVSRD +I PIDK QT T+QLV+KDKKHNLPITKKKP  KVAKQKSR KPRSKR+KKKGR+KK
Subjt:  DHEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1DWL6 ribosomal RNA-processing protein 17-like

4.3e-96

100

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
        MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDD

Query:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
Subjt:  HEDEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1EG67 ribosomal RNA-processing protein 17

4.1e-62

74.24

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE +EGG L Q    HIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +  DEDEEEK  APISE T YDSGNIKVTVTTSEV RDE+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

7.0e-62

73.74

Show/hide

Query:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND
        MV+NE  EGG L Q    H+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEA +  + +  KK+K EK+LVL+GGVLPAD PVD+QND
Subjt:  MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQ-KGFKKKKEEKELVLYGGVLPADWPVDKQND

Query:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK
        D +  DEDEEEK  APISE TTYDSGNIKVTVTTSEV R+E+I PIDKPQ +TSQL++KDKKH+LPITKKKP  KVA++KSR K RSK +KKKGR+KK
Subjt:  DHE--DEDEEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

3.0e-25

46.07

Show/hide

Query:  DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDED
        +E G LA      HI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA +  +   +K ++ +EL++ G     D    +  D+ + ED
Subjt:  DEGGELA-QLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDED

Query:  EEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRR
        EE +  A  S  T YD+G +KVTVTTSE+SR+E+  PI K +T +++  S  K   K  +P+ K KP+ K ++++S  K   KR+KKK  R
Subjt:  EEEKSFAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDK---KHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGAGAACGAAGGGGACGAAGGAGGTGAGCTTGCACAGCTTTGTGGTTCCCACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCAGTGTCTTTCAATGAGAA
AGACTTGCGTGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCAGAGAAGCAGCAAGAGGAAGCGCATCAAATTACGCAAAAAGGTTTTAAAA
AAAAAAAGGAAGAAAAAGAGCTGGTGCTATATGGTGGTGTTCTACCAGCTGATTGGCCGGTTGACAAGCAGAATGATGATCATGAGGATGAGGACGAGGAAGAGAAGTCA
TTTGCCCCAATTTCTGAGATGACGACGTATGACAGTGGTAACATTAAAGTCACGGTGACAACTAGTGAGGTATCTCGTGATGAAAAAATATATCCCATTGACAAGCCACA
GACAACAACAAGCCAATTGGTTTCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTAAATAAAGTTGCAAAACAGAAGTCAAGGCTGAAGCCCCGAA
GTAAACGAGAGAAAAAGAAGGGAAGAAGAAAGAAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVENEGDEGGELAQLCGSHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAHQITQKGFKKKKEEKELVLYGGVLPADWPVDKQNDDHEDEDEEEKS
FAPISEMTTYDSGNIKVTVTTSEVSRDEKIYPIDKPQTTTSQLVSKDKKHNLPITKKKPLNKVAKQKSRLKPRSKREKKKGRRKK

MS002532 (gene) of Bitter gourd (TR) v1 genome