CuGenDBv2

Gene ID	MS002563
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Genome location	scaffold249:72871..73273
RNA-Seq Expression	MS002563
Synteny	MS002563
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583459.1 hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-55

85.93

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M +MLTFLFCLSS TFL +AQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQ  NAKDPC ASKCSPLPLAAQVQSTPA   +YSTT+QKG HR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQP
        GIVFGITFAV LAMGVYYVLR RQANANRA+SAQP
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQP

KAG7019217.1 hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-56

86.67

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M +MLTFLFCLSS TFL +AQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQ  NAKDPC ASKCSPLPLAAQVQSTPA   +YSTT+QKG HR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQP
        GIVFGITFAVFLAMGVYYVLR RQANANRA+SAQP
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQP

XP_008457527.1 PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo]

9.9e-54

83.33

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M RMLTFLFCLSS TFL VA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ+ N KDPC  SKCSPLPLAAQVQSTPA   +YSTT+Q  KHR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA
        GIVFGITFAVFLAMGVYYVLR RQANANRA+S AQP A
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA

XP_011657962.2 uncharacterized protein LOC105435923 [Cucumis sativus]

4.2e-52

80.43

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M RMLTFLFCL+S TFL +AQA+GRAPHGLVYESPVAFSPMAYDFFHPSTQ+ + KDPC  SKCSPLPLAAQVQSTPA   +YSTT+Q   HR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA
        GIVFGITFAVFL MGVYYVLR RQANANRA+S AQP A
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA

XP_022158643.1 uncharacterized protein LOC111025099 [Momordica charantia]

4.0e-55

84.67

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL
        M +MLTFLFCLSS TFL VA+AEGRAPHGLVYESP+AFSPMAYDFFHPS Q+SNAKDPCAASKCSPLPLAAQVQSTPAQ   YST VQKG+H L AGG+L
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA
        GIV GI FAVFLAMGVYYVLR RQANANRA+S QPGA
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LV85 Uncharacterized protein

5.9e-52

79.71

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M RMLTFLFCL+S TFL +A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ+ + KDPC  SKCSPLPLAAQVQSTPA   +YSTT+Q   HR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA
        GIVFGITFAVFL MGVYYVLR RQANANRA+S AQP A
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA

A0A1S3C6E2 uncharacterized protein LOC103497198

4.8e-54

83.33

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M RMLTFLFCLSS TFL VA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ+ N KDPC  SKCSPLPLAAQVQSTPA   +YSTT+Q  KHR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA
        GIVFGITFAVFLAMGVYYVLR RQANANRA+S AQP A
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA

A0A5A7SXJ1 Uncharacterized protein

4.8e-54

83.33

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL
        M RMLTFLFCLSS TFL VA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ+ N KDPC  SKCSPLPLAAQVQSTPA   +YSTT+Q  KHR+ AGGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPA---QYSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA
        GIVFGITFAVFLAMGVYYVLR RQANANRA+S AQP A
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAIS-AQPGA

A0A6J1DWP3 uncharacterized protein LOC111025099

1.9e-55

84.67

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL
        M +MLTFLFCLSS TFL VA+AEGRAPHGLVYESP+AFSPMAYDFFHPS Q+SNAKDPCAASKCSPLPLAAQVQSTPAQ   YST VQKG+H L AGG+L
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA
        GIV GI FAVFLAMGVYYVLR RQANANRA+S QPGA
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA

A0A6J1KCV5 uncharacterized protein LOC111493157

3.3e-47

76.64

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL
        MA+ LTFLF LSS TFL    AEGRAPHGL YE+PVAFSPMAYDFFHP T+  NA+DPC ASKCSPLPLAAQ+QS PAQ   YSTT QKG+     GGIL
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQ---YSTTVQKGKHRLEAGGIL

Query:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA
        GIVFGITFAVFLAMGVYYVLR R ANANRA+SA+PGA
Subjt:  GIVFGITFAVFLAMGVYYVLRIRQANANRAISAQPGA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28410.1 unknown protein

5.5e-18

45.22

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Query:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAK-DPCAASKCSPLPLAAQVQ--STPAQYSTTVQKG---KHRLEAG
        M      +F  SSL     A A+ RAPHGL YE+PVAFSP A+DFFH   ++ +   +PC+ S CSPLP+AA+VQ  S  AQ S  V      +  +E  
Subjt:  MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAK-DPCAASKCSPLPLAAQVQ--STPAQYSTTVQKG---KHRLEAG

Query:  GILGIVFGITFAVFL
        G++GI+FG+ FAV +
Subjt:  GILGIVFGITFAVFL

AT5G60650.1 unknown protein

8.2e-14

36.03

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Query:  MLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAAS----KCSPLPLAAQVQSTPAQYS-------TTVQKGKHRLE
        +L F  CLS L  L V+ A  R  HG  Y +P AFSP AYDFFHP +  S+  +P  +S      SP P    +    +Q S       TT +  +    
Subjt:  MLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAAS----KCSPLPLAAQVQSTPAQYS-------TTVQKGKHRLE

Query:  AGGILGIVFGITFAVFLAMGVYYVLRIRQANANRAI
         G  +G+V G++F  FL++G+Y+V++ ++AN  R I
Subjt:  AGGILGIVFGITFAVFLAMGVYYVLRIRQANANRAI

Sequences

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CDS sequence

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ATGGCTCGAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTGACGTTTCTTTATGTTGCCCAAGCAGAAGGCAGAGCCCCTCATGGGTTGGTATACGAGAGCCCA
GTCGCGTTCTCTCCAATGGCATATGATTTCTTTCATCCAAGCACCCAGGATTCTAATGCCAAAGACCCATGTGCTGCATCCAAATGCTCCCCCCTACCCCTTGCA
GCCCAAGTGCAATCTACTCCTGCACAATACTCCACAACAGTCCAAAAAGGCAAGCACCGACTTGAGGCTGGTGGGATTCTGGGGATTGTGTTTGGCATCACGTTT
GCTGTGTTTTTGGCAATGGGGGTCTACTATGTGTTACGAATCCGCCAAGCCAACGCAAACCGAGCAATTTCTGCACAACCAGGCGCT

mRNA sequence

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Protein sequence

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MARMLTFLFCLSSLTFLYVAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQDSNAKDPCAASKCSPLPLAAQVQSTPAQYSTTVQKGKHRLEAGGILGIVFGITF
AVFLAMGVYYVLRIRQANANRAISAQPGA

MS002563 (gene) of Bitter gourd (TR) v1 genome