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MS002564 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002564
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold249:79459..79719
RNA-Seq ExpressionMS002564
SyntenyMS002564
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.1e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIW---DGAGGSHLVNWKKVTNPSIHG
        P +  FW  I  +IQ  L  W++  ISKGG+L L K  LS   I   S+F   + T   + +  R+F+W   +G+ GSHL+NW KVT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIW---DGAGGSHLVNWKKVTNPSIHG

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0737.63Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDG---AGGSHLVNWKKVTNPSIHG
        P +  FW  +  +IQ  L  W++  ISKGG+L L K  LS L T   S+F   ++T   + +  R+F+W G   + G HL+NW KVT     G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDG---AGGSHLVNWKKVTNPSIHG

KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG
        P +  FW  I  RIQ  L+ W++  ISKGG+L L K  LS   I   S+F   + T   + ++ R+F+W    G+ GSHL+NW  VT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWDGA---GGSHLVNWKKVTNPSIHG
        P +  FW  I  RIQ  L+ W++  ISKGG+L L K  LS   I   S+F   + T   + ++ R+F+W G+    GSHL+NW  VT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWDGA---GGSHLVNWKKVTNPSIHG

TYK05690.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.3e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG
        P +  FW  I  RIQ  L+ W++  ISKGG+L L K  LS   I   S+F   + T   + ++ R+F+W    G+ GSHL+NW  VT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG

TrEMBL top hitse value%identityAlignment
A0A2N9EIX0 Reverse transcriptase domain-containing protein1.5e-0842.7Show/hide
Query:  SFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNPSIHG
        S W LI+ R++  LA W+   +SKGGK+ L K  LS L T   S+F I A     L ++ RDF+W+G G     HLV+W K+  P  HG
Subjt:  SFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNPSIHG

A0A2N9FD14 Splicing factor YJU23.4e-0840.45Show/hide
Query:  SFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNPSIHG
        + W LI+ +++  LA W+   +SKGGK+ L K  LS L T   S+F ILA   + L ++ RDF+W G G     HLV+W K+  P   G
Subjt:  SFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNPSIHG

A0A2N9HMA0 Uncharacterized protein3.4e-0842.17Show/hide
Query:  WVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNP
        W  ++ +++  LA W+   +SKGGKL L K  LS L T   S+FH+ A     L ++ RDF+WDG G     HLVNW K+  P
Subjt:  WVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILST---SIFHILAMTTDTLGEMVRDFIWDGAGGS---HLVNWKKVTNP

A0A5D3C2W8 LINE-1 retrotransposable element ORF2 protein2.6e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG
        P +  FW  I  RIQ  L+ W++  ISKGG+L L K  LS   I   S+F   + T   + ++ R+F+W    G+ GSHL+NW  VT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIWD---GAGGSHLVNWKKVTNPSIHG

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.0e-0839.78Show/hide
Query:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIW---DGAGGSHLVNWKKVTNPSIHG
        P +  FW  I  +IQ  L  W++  ISKGG+L L K  LS   I   S+F   + T   + +  R+F+W   +G+ GSHL+NW KVT P   G
Subjt:  PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLS---ILSTSIFHILAMTTDTLGEMVRDFIW---DGAGGSHLVNWKKVTNPSIHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTCTACTCTTTCCTTTTGGGTTCTGATTGTCAGCAGGATTCAAGGAAACTTAGCAAAATGGAGATGGTTTCCTATTTCCAAAGGAGGGAAATTAATCTTAGAG
AAATATGTTCTTTCGATTTTGTCTACCTCCATCTTTCACATTCTGGCAATGACTACTGATACCTTGGGGGAAATGGTTAGAGATTTTATTTGGGATGGAGCTGGT
GGGAGCCATCTAGTTAACTGGAAAAAGGTTACTAATCCCTCAATCCATGGG
mRNA sequenceShow/hide mRNA sequence
CCTTCTACTCTTTCCTTTTGGGTTCTGATTGTCAGCAGGATTCAAGGAAACTTAGCAAAATGGAGATGGTTTCCTATTTCCAAAGGAGGGAAATTAATCTTAGAG
AAATATGTTCTTTCGATTTTGTCTACCTCCATCTTTCACATTCTGGCAATGACTACTGATACCTTGGGGGAAATGGTTAGAGATTTTATTTGGGATGGAGCTGGT
GGGAGCCATCTAGTTAACTGGAAAAAGGTTACTAATCCCTCAATCCATGGG
Protein sequenceShow/hide protein sequence
PSTLSFWVLIVSRIQGNLAKWRWFPISKGGKLILEKYVLSILSTSIFHILAMTTDTLGEMVRDFIWDGAGGSHLVNWKKVTNPSIHG