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MS002565 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002565
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger, C3HC4 type family protein
Genome locationscaffold249:97072..97634
RNA-Seq ExpressionMS002565
SyntenyMS002565
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607218.1 hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3286.75Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLGAALGSVF GVVVFEQRKS+YRSISENYPPA QSPM+K V+AKKYGPE+SHLWNRAVDQTFGP+IQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

XP_004152895.1 uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]8.5e-3387.95Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I +  QERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPA QSPMRKPV+AKKYGPE SHLWNRAVDQTFGP+IQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

XP_008457526.1 PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo]8.5e-3387.95Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I +  QERLLG ALGS FAGVVVFEQRKSLY+SISENYPPA QSPMRKPV+AKKYGPE SHLWNRAVDQTFGPMIQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

XP_022156577.1 uncharacterized protein LOC111023455 [Momordica charantia]3.7e-3696.39Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

XP_023519919.1 uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]7.2e-3286.75Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP  QSPMRKPV+AKKYGPE SHLWN AVDQTFGP+IQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

TrEMBL top hitse value%identityAlignment
A0A0A0LXB2 Uncharacterized protein1.1e-3382.22Show/hide
Query:  LSLFLVEIWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        + L++  I +  QERLLG ALGSVFAGVVVFEQRKSLY+SISENYPPA QSPMRKPV+AKKYGPE SHLWNRAVDQTFGP+IQALSSRGW
Subjt:  LSLFLVEIWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

A0A1S3C5P6 uncharacterized protein LOC103497197 isoform X24.1e-3387.95Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I +  QERLLG ALGS FAGVVVFEQRKSLY+SISENYPPA QSPMRKPV+AKKYGPE SHLWNRAVDQTFGPMIQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

A0A5D3BR76 Uncharacterized protein4.1e-3387.95Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I +  QERLLG ALGS FAGVVVFEQRKSLY+SISENYPPA QSPMRKPV+AKKYGPE SHLWNRAVDQTFGPMIQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

A0A6J1DSC3 uncharacterized protein LOC1110234551.8e-3696.39Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

A0A6J1HZ79 uncharacterized protein LOC1114694465.9e-3286.75Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLGAALGSVFAGVVVFEQRKSLY SIS+NYPP  QSPMRKPV+AKKYGPE SHLWN AVDQTFGP+IQALSSRGW
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28430.1 unknown protein1.4e-1448.81Show/hide
Query:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISE-NYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW
        I I  QERLLG  LGS   G +VFEQRK ++ S+S+      +Q+ +   +  KKY  E + LWN+AVDQTF P I+ LSSR W
Subjt:  IWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISE-NYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTCCCTTTTTTTGGTGGAAATCTGGATTTCATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTATTCGCCGGGGTTGTCGTTTTTGAGCAACGGAAA
AGCTTATATAGGTCCATTTCGGAAAATTATCCGCCCGCCAACCAATCTCCGATGAGAAAACCTGTAGTAGCAAAGAAATATGGTCCAGAGGTTTCGCACCTATGG
AATAGAGCTGTTGACCAGACATTTGGACCCATGATTCAGGCTCTCAGTTCGCGGGGATGG
mRNA sequenceShow/hide mRNA sequence
CTTTCCCTTTTTTTGGTGGAAATCTGGATTTCATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTATTCGCCGGGGTTGTCGTTTTTGAGCAACGGAAA
AGCTTATATAGGTCCATTTCGGAAAATTATCCGCCCGCCAACCAATCTCCGATGAGAAAACCTGTAGTAGCAAAGAAATATGGTCCAGAGGTTTCGCACCTATGG
AATAGAGCTGTTGACCAGACATTTGGACCCATGATTCAGGCTCTCAGTTCGCGGGGATGG
Protein sequenceShow/hide protein sequence
LSLFLVEIWISLQERLLGAALGSVFAGVVVFEQRKSLYRSISENYPPANQSPMRKPVVAKKYGPEVSHLWNRAVDQTFGPMIQALSSRGW