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MS002573 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002573
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein
Genome locationscaffold249:423891..424082
RNA-Seq ExpressionMS002573
SyntenyMS002573
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-0744.07Show/hide
Query:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
        E  S+  +R++ +L+ +P M +++CL V E+LL D   +  FLD+P  WKYR CMR+LG
Subjt:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-0745.76Show/hide
Query:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
        E  S+  +R++ EL+ +P M +++CL V E+LL D   +  FLD+P  WKYR CMR+LG
Subjt:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein3.6e-0744.07Show/hide
Query:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
        E  S+  +R++ +L+ +P M +++CL V E+LL D   +  FLD+P  WKYR CMR+LG
Subjt:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
A0A5A7VG45 Retrotransposon protein1.6e-0745.76Show/hide
Query:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
        E  S+  +R++ EL+ +P M +++CL V E+LL D   +  FLD+P  WKYR CMR+LG
Subjt:  ERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAACCAAAAGAGATGAAAGGGCCTCAGCTCAAAGGAGACGAGTGTTTGCAGAACTTGAACCCGTCCCTAGAATGACATTGGAGAACTGTTTGGCAGTCGTAGAA
ACTTTACTTGCAGACTCCAATAAGGTGAAAACATTCCTTGATTTTCCACCAAATTGGAAGTACAGGTACTGCATGCGTCTACTTGGA
mRNA sequenceShow/hide mRNA sequence
TCAACCAAAAGAGATGAAAGGGCCTCAGCTCAAAGGAGACGAGTGTTTGCAGAACTTGAACCCGTCCCTAGAATGACATTGGAGAACTGTTTGGCAGTCGTAGAA
ACTTTACTTGCAGACTCCAATAAGGTGAAAACATTCCTTGATTTTCCACCAAATTGGAAGTACAGGTACTGCATGCGTCTACTTGGA
Protein sequenceShow/hide protein sequence
STKRDERASAQRRRVFAELEPVPRMTLENCLAVVETLLADSNKVKTFLDFPPNWKYRYCMRLLG