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MS002612 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002612
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold111:147206..147544
RNA-Seq ExpressionMS002612
SyntenyMS002612
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045000.1 uncharacterized protein E6C27_scaffold74G003100 [Cucumis melo var. makuwa]1.8e-1137.61Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I  C D QK+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TWE  K LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

KAG6577099.1 hypothetical protein SDJN03_24673, partial [Cucurbita argyrosperma subsp. sororia]6.7e-1136.44Show/hide
Query:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA
        N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A
Subjt:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA

Query:  EAEAMTWEMFKFLFQDRY
        +  A+TWE FK LF  RY
Subjt:  EAEAMTWEMFKFLFQDRY

KAG7015101.1 hypothetical protein SDJN02_22734, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-1136.44Show/hide
Query:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA
        N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A
Subjt:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA

Query:  EAEAMTWEMFKFLFQDRY
        +  A+TWE FK LF  RY
Subjt:  EAEAMTWEMFKFLFQDRY

TYK16471.1 uncharacterized protein E5676_scaffold21G002740 [Cucumis melo var. makuwa]3.5e-1238.46Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I  C D QK+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TWE FK LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

XP_004147729.1 uncharacterized protein LOC101209793 [Cucumis sativus]4.6e-1237.61Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    EM    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I C D++ K+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TW+ FK LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

TrEMBL top hitse value%identityAlignment
A0A0A0L042 Retrotrans_gag domain-containing protein2.2e-1237.61Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    EM    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I C D++ K+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TW+ FK LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

A0A5A7TP79 Retrotrans_gag domain-containing protein8.5e-1237.61Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I  C D QK+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TWE  K LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

A0A5D3CX20 Retrotrans_gag domain-containing protein1.7e-1238.46Show/hide
Query:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE
        N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E +FD+I  C D QK+ FA LRL+D    WWM      EA+
Subjt:  NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAE

Query:  AEAMTWEMFKFLFQDRY
           +TWE FK LF+ RY
Subjt:  AEAMTWEMFKFLFQDRY

A0A6J1EYB6 uncharacterized protein LOC111437567 isoform X13.2e-1136.44Show/hide
Query:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA
        N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A
Subjt:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA

Query:  EAEAMTWEMFKFLFQDRY
        +  A+TWE FK LF  RY
Subjt:  EAEAMTWEMFKFLFQDRY

A0A6J1EZ79 uncharacterized protein LOC111437567 isoform X23.2e-1136.44Show/hide
Query:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA
        N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A
Subjt:  NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEA

Query:  EAEAMTWEMFKFLFQDRY
        +  A+TWE FK LF  RY
Subjt:  EAEAMTWEMFKFLFQDRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACATCGAAAAGTTTTACGACGAGTTCTGCAGATTTAAGGGGGAAATGAATGGTGCGATAGCCGAGCAGAGGGAAGAAGATAATAGAAACAAACTGGAGTTTGTTTCAGA
TGAATGTCCTTTTTACAGGCACCCCATGAATGGCAAACACTGGATTTTCCCAATGGAAAAAATGTTTGATATCATAGGATGCTGTGATGACAACCAAAAGCTTGATTTTG
CACTCCTCAGGCTGCGAGATGATGAACTTTTATGGTGGATGGGAGAGCAAAAATGTGCAGAAGCAGAAGCAGAAGCCATGACGTGGGAGATGTTCAAGTTCTTATTCCAG
GATAGGTAC
mRNA sequenceShow/hide mRNA sequence
AACATCGAAAAGTTTTACGACGAGTTCTGCAGATTTAAGGGGGAAATGAATGGTGCGATAGCCGAGCAGAGGGAAGAAGATAATAGAAACAAACTGGAGTTTGTTTCAGA
TGAATGTCCTTTTTACAGGCACCCCATGAATGGCAAACACTGGATTTTCCCAATGGAAAAAATGTTTGATATCATAGGATGCTGTGATGACAACCAAAAGCTTGATTTTG
CACTCCTCAGGCTGCGAGATGATGAACTTTTATGGTGGATGGGAGAGCAAAAATGTGCAGAAGCAGAAGCAGAAGCCATGACGTGGGAGATGTTCAAGTTCTTATTCCAG
GATAGGTAC
Protein sequenceShow/hide protein sequence
NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLEFVSDECPFYRHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQ
DRY