; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002621 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002621
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription initiation factor TFIID subunit 14b
Genome locationscaffold111:225908..226126
RNA-Seq ExpressionMS002621
SyntenyMS002621
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005033 - YEATS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134869.1 transcription initiation factor TFIID subunit 14b [Cucumis sativus]2.3e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
XP_008440808.1 PREDICTED: transcription initiation factor TFIID subunit 14b isoform X1 [Cucumis melo]2.3e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
XP_016899133.1 PREDICTED: transcription initiation factor TFIID subunit 14b isoform X2 [Cucumis melo]2.3e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
XP_022979048.1 transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita maxima]2.3e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
XP_022979050.1 transcription initiation factor TFIID subunit 14b-like isoform X2 [Cucurbita maxima]2.3e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
TrEMBL top hitse value%identityAlignment
A0A0A0KJC2 Uncharacterized protein1.1e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
A0A1S3B2R3 transcription initiation factor TFIID subunit 14b isoform X31.1e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
A0A5A7SJ54 Transcription initiation factor TFIID subunit 14b isoform X31.1e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
A0A6J1IS36 transcription initiation factor TFIID subunit 14b-like isoform X21.1e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
A0A6J1IV07 transcription initiation factor TFIID subunit 14b-like isoform X11.1e-1258.67Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
        L FHSDV DKQL+LFHH  LYP+DE GPQ T+KP VVESYNEIVFP+PS+ F   + +  ++        FNLPN
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQ-TRKP-VVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN
SwissProt top hitse value%identityAlignment
F4IPK2 Transcription initiation factor TFIID subunit 144.8e-0546.3Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
        + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
Q9FH40 Transcription initiation factor TFIID subunit 14b3.4e-1167.31Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF
        L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF
Arabidopsis top hitse value%identityAlignment
AT2G18000.1 TBP-associated factor 143.4e-0646.3Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
        + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
AT2G18000.2 TBP-associated factor 143.4e-0646.3Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
        + FH+DV +K+L L H   L P++ +GP     + PVV ESYNE+VFP+P + F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGP---QTRKPVV-ESYNEIVFPNPSDFF
AT5G45600.1 YEATS family protein2.4e-1267.31Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF
        L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF
AT5G45600.2 YEATS family protein2.4e-1267.31Show/hide
Query:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF
        L FHSDV DK L+L+HH  LYP+DE GP T +KP VVESY+EIVFP+PS+ F
Subjt:  LLFHSDVFDKQLNLFHHFMLYPKDEFGPQT-RKP-VVESYNEIVFPNPSDFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCTTTTCCACAGTGATGTATTTGATAAACAGTTAAATCTGTTTCACCATTTCATGTTGTACCCTAAAGATGAGTTTGGTCCACAAACAAGGAAACCTGTTGTGGAATC
CTACAATGAAATTGTGTTTCCTAATCCATCAGATTTTTTCCCTTTTTGGCTCGTATCCAGAGCCTCCATCTATTGTTGTCCCAGCTTCCTTGATTTTAATTTGCCTAAT
mRNA sequenceShow/hide mRNA sequence
CTTCTTTTCCACAGTGATGTATTTGATAAACAGTTAAATCTGTTTCACCATTTCATGTTGTACCCTAAAGATGAGTTTGGTCCACAAACAAGGAAACCTGTTGTGGAATC
CTACAATGAAATTGTGTTTCCTAATCCATCAGATTTTTTCCCTTTTTGGCTCGTATCCAGAGCCTCCATCTATTGTTGTCCCAGCTTCCTTGATTTTAATTTGCCTAAT
Protein sequenceShow/hide protein sequence
LLFHSDVFDKQLNLFHHFMLYPKDEFGPQTRKPVVESYNEIVFPNPSDFFPFWLVSRASIYCCPSFLDFNLPN