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MS002644 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002644
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationscaffold111:416956..417586
RNA-Seq ExpressionMS002644
SyntenyMS002644
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]1.5e-4794.5Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        P+GDVYVGG
Subjt:  PSGDVYVGG

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]3.2e-5098.17Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTDKPY GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]1.9e-4792.66Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]1.9e-4792.66Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.3e-4895.41Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSA+GLPSLAR S  FKVEASGGKKIKTDKPY GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic7.1e-4894.5Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        P+GDVYVGG
Subjt:  PSGDVYVGG

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic7.1e-4894.5Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNLRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        P+GDVYVGG
Subjt:  PSGDVYVGG

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic1.5e-5098.17Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTDKPY GINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic9.3e-4892.66Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic9.3e-4892.66Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWS
Subjt:  MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGG
        PSGDVYVGG
Subjt:  PSGDVYVGG

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.5e-3979.09Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MA++VM+S+SLKP  FT+EK S +GLPSLAR+S+SFKV ASG KK+KTDKPY GINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +W
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGG
        SPSGDVYVGG
Subjt:  SPSGDVYVGG

P27202 Photosystem II 10 kDa polypeptide, chloroplastic2.4e-3776.58Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTDKP+ GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGG
        WS SGDVY GG
Subjt:  WSPSGDVYVGG

P49108 Photosystem II 10 kDa polypeptide, chloroplastic7.1e-3776.79Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-ASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTK
        MAASVM +SV+LKPA FTVEK SARGLPSL R S +SF++ ASG KKIKTDKP+ G+NGSM+LRDG+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-ASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTK

Query:  DWSPSGDVYVGG
        +WS SGDVY GG
Subjt:  DWSPSGDVYVGG

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.5e-3978.18Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MA++VM+S+SLKP  FT+EK S +GLPSL R+S+SFKV ASG KK+KTDKPY GINGSM LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +W
Subjt:  MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGG
        SPSGDVYVGG
Subjt:  SPSGDVYVGG

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic2.8e-4180.91Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW
        MA++VM   SLKPAPF+VEK+A +GLPSLAR+S+SF+V+ASG KK+KTDKPY GINGSM+LRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DW
Subjt:  MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGG
        SPSGDVYVGG
Subjt:  SPSGDVYVGG

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R1.7e-3876.58Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTDKP+ GINGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGG
        WS SGDVY GG
Subjt:  WSPSGDVYVGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCGTCGGTGATGACCTCCGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTCGCCAGGACTTCCGCCTCCTTCAAAGT
CGAGGCCAGCGGCGGGAAGAAGATCAAGACCGACAAACCCTACGCAGGAATCAATGGTTCGATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGCA
AGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTACGATACCAAGGACTGGTCTCCGAGTGGTGATGTCTATGTTGGTGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCGTCGGTGATGACCTCCGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTCGCCAGGACTTCCGCCTCCTTCAAAGT
CGAGGCCAGCGGCGGGAAGAAGATCAAGACCGACAAACCCTACGCAGGAATCAATGGTTCGATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGCA
AGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTACGATACCAAGGACTGGTCTCCGAGTGGTGATGTCTATGTTGGTGGT
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG