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MS002671 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002671
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold928:165308..165595
RNA-Seq ExpressionMS002671
SyntenyMS002671
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041674.1 movement protein [Cucumis melo var. makuwa]6.7e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

KAA0041675.1 Peptidase_A3 domain-containing protein [Cucumis melo var. makuwa]5.2e-0433.33Show/hide
Query:  SNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKHKKV
        S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  K +
Subjt:  SNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKHKKV

KAA0057417.1 Enzymatic polyprotein [Cucumis melo var. makuwa]1.0e-0433.01Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   CF  +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

KAA0058440.1 hypothetical protein E6C27_scaffold132G00230 [Cucumis melo var. makuwa]6.7e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

TYJ96702.1 hypothetical protein E5676_scaffold535G00180 [Cucumis melo var. makuwa]6.7e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

TrEMBL top hitse value%identityAlignment
A0A5A7TJR5 Peptidase_A3 domain-containing protein2.5e-0433.33Show/hide
Query:  SNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKHKKV
        S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  K +
Subjt:  SNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKHKKV

A0A5A7URX9 Enzymatic polyprotein5.0e-0533.01Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   CF  +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

A0A5A7UTK4 Uncharacterized protein3.3e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

A0A5D3BA08 Uncharacterized protein3.3e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

A0A5D3C4I7 Movement protein3.3e-0432.04Show/hide
Query:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH
        +++  SS   S+   DYIN ++Q   S  E  F+     S+D+G  PC   C   C   +N++T +Q+TLFDL E+I + + ++  LL L  ++E+ +  
Subjt:  NEESESSIGSSNEHSDYINKVVQSSSSEYEISFF----ESEDDGVKPCVAAC---CFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKH

Query:  KKV
        K +
Subjt:  KKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACGAAGAGTCAGAATCAAGTATTGGTAGCTCAAACGAGCATTCAGATTATATTAATAAAGTCGTGCAATCTTCTTCCTCAGAATATGAGATTTCCTTTTTTGAGTCTGA
AGACGATGGAGTAAAACCATGCGTTGCTGCATGTTGTTTCAATACAGTCAACATGCTCACTAGCGAGCAACAAACTCTATTTGATCTGGCAGAAAAGATTAATGAACCAG
ACCTACAGAAGAATATTTTGCTTTCACTCCATGCCAACATTGAGAAGGACCTCAAGCACAAGAAAGTG
mRNA sequenceShow/hide mRNA sequence
AACGAAGAGTCAGAATCAAGTATTGGTAGCTCAAACGAGCATTCAGATTATATTAATAAAGTCGTGCAATCTTCTTCCTCAGAATATGAGATTTCCTTTTTTGAGTCTGA
AGACGATGGAGTAAAACCATGCGTTGCTGCATGTTGTTTCAATACAGTCAACATGCTCACTAGCGAGCAACAAACTCTATTTGATCTGGCAGAAAAGATTAATGAACCAG
ACCTACAGAAGAATATTTTGCTTTCACTCCATGCCAACATTGAGAAGGACCTCAAGCACAAGAAAGTG
Protein sequenceShow/hide protein sequence
NEESESSIGSSNEHSDYINKVVQSSSSEYEISFFESEDDGVKPCVAACCFNTVNMLTSEQQTLFDLAEKINEPDLQKNILLSLHANIEKDLKHKKV