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MS002720 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002720
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionfibroin heavy chain-like
Genome locationscaffold66:22798..23139
RNA-Seq ExpressionMS002720
SyntenyMS002720
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577377.1 hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1955.05Show/hide
Query:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S
        G RR VDP+ING G+G+GV +GYR G+  GLGG  +W GPG      G ++EC LGYVCP+  RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  S
Subjt:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S

Query:  KPVETAQFG
        KP  T Q G
Subjt:  KPVETAQFG

KGN56231.1 hypothetical protein Csa_011503 [Cucumis sativus]2.6e-1850.42Show/hide
Query:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPG--FEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVE
        G R G +GVDPI+ G GVGVGV          +G RPG GG    W GPG   + P + CMLGYVCP++    C    Y  C SY F PL+ S + H+V+
Subjt:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPG--FEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVE

Query:  INWATSKPVETAQFGNSGP
        INWA SK VETAQ G SGP
Subjt:  INWATSKPVETAQFGNSGP

XP_022929340.1 fibroin heavy chain-like [Cucurbita moschata]1.0e-1955.05Show/hide
Query:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S
        G RR VDP+ING G+G+GV +GYR G+  GLGG  +W GPG      G ++EC LGYVCP+  RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  S
Subjt:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S

Query:  KPVETAQFG
        KP  T Q G
Subjt:  KPVETAQFG

XP_023551823.1 fibroin heavy chain-like isoform X1 [Cucurbita pepo subsp. pepo]4.7e-2056.07Show/hide
Query:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF--EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKP
        G RR VDP+ING G+G+GV +GYR G+  G+GG  +W GPG    G ++EC LGYVCP+  RRGC+ FSY  C SYGF+PL  S+  HEVE+ WA  SKP
Subjt:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF--EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKP

Query:  VETAQFG
          T Q G
Subjt:  VETAQFG

XP_023551824.1 fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo]4.7e-2056.07Show/hide
Query:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF--EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKP
        G RR VDP+ING G+G+GV +GYR G+  G+GG  +W GPG    G ++EC LGYVCP+  RRGC+ FSY  C SYGF+PL  S+  HEVE+ WA  SKP
Subjt:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF--EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKP

Query:  VETAQFG
          T Q G
Subjt:  VETAQFG

TrEMBL top hitse value%identityAlignment
A0A0A0L7X7 Uncharacterized protein1.2e-1850.42Show/hide
Query:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPG--FEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVE
        G R G +GVDPI+ G GVGVGV          +G RPG GG    W GPG   + P + CMLGYVCP++    C    Y  C SY F PL+ S + H+V+
Subjt:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPG--FEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVE

Query:  INWATSKPVETAQFGNSGP
        INWA SK VETAQ G SGP
Subjt:  INWATSKPVETAQFGNSGP

A0A5A7V4J6 Uncharacterized protein2.9e-1548.39Show/hide
Query:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPGFEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVEIN
        G+  G R     +NGFGVGVGV          +G +PG G  G Y  GP  + P   CMLGYVCP+     C+ F+Y  C SY F+PL+ S D HEV+IN
Subjt:  GLRGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGLGGYWSGPGFEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVEIN

Query:  WATSKPVETAQFGNSGP--HQSSA
        WA SKP  TAQ G SGP  H  SA
Subjt:  WATSKPVETAQFGNSGP--HQSSA

A0A6J1EU53 fibroin heavy chain-like5.0e-2055.05Show/hide
Query:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S
        G RR VDP+ING G+G+GV +GYR G+  GLGG  +W GPG      G ++EC LGYVCP+  RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  S
Subjt:  GGRRGVDPIINGFGVGVGVGVGYRPGY-GGLGG--YWSGPGF----EGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-S

Query:  KPVETAQFG
        KP  T Q G
Subjt:  KPVETAQFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGACTCCGCGGCGGCAGGAGAGGTGTTGATCCGATCATTAATGGATTTGGAGTTGGAGTCGGAGTTGGGGTTGGGTACAGGCCGGGATACGGTGGGCTGGGGGGGTACTG
GTCTGGCCCAGGATTTGAGGGGCCGAACAGCGAGTGCATGTTGGGCTATGTTTGTCCATCCAGTGATCGTAGGGGATGCAATGGCTTTTCTTATGAAGGTTGCCGATCTT
ACGGCTTTTATCCACTGACTTCAATTGACCACCACGAAGTAGAAATCAATTGGGCCACATCCAAGCCCGTTGAAACGGCCCAATTTGGCAATTCTGGACCCCATCAGTCA
TCGGCCCAACAT
mRNA sequenceShow/hide mRNA sequence
GGACTCCGCGGCGGCAGGAGAGGTGTTGATCCGATCATTAATGGATTTGGAGTTGGAGTCGGAGTTGGGGTTGGGTACAGGCCGGGATACGGTGGGCTGGGGGGGTACTG
GTCTGGCCCAGGATTTGAGGGGCCGAACAGCGAGTGCATGTTGGGCTATGTTTGTCCATCCAGTGATCGTAGGGGATGCAATGGCTTTTCTTATGAAGGTTGCCGATCTT
ACGGCTTTTATCCACTGACTTCAATTGACCACCACGAAGTAGAAATCAATTGGGCCACATCCAAGCCCGTTGAAACGGCCCAATTTGGCAATTCTGGACCCCATCAGTCA
TCGGCCCAACAT
Protein sequenceShow/hide protein sequence
GLRGGRRGVDPIINGFGVGVGVGVGYRPGYGGLGGYWSGPGFEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDHHEVEINWATSKPVETAQFGNSGPHQS
SAQH