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MS002722 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002722
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHomeobox-leucine zipper protein ROC3
Genome locationscaffold66:25641..25739
RNA-Seq ExpressionMS002722
SyntenyMS002722
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR042160 - Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EMS57936.1 Homeobox-leucine zipper protein ROC3 [Triticum urartu]2.0e-0890.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
KAF3449368.1 hypothetical protein FNV43_RR10096 [Rhamnella rubrinervis]1.5e-0890.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+SLFKECPHPDDKQR+KLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
XP_015897558.1 LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3-like [Ziziphus jujuba]9.1e-0993.94Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+SLFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
XP_038725204.1 homeobox-leucine zipper protein HDG5 [Tripterygium wilfordii]1.5e-0890.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+SLFKECPHPDDKQR+KLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
XP_042019629.1 homeobox-leucine zipper protein HDG5-like [Salvia splendens]1.5e-0890.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+S+FKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
TrEMBL top hitse value%identityAlignment
A0A1B6QLR7 Uncharacterized protein9.8e-0990.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
A0A368SMK4 Uncharacterized protein9.8e-0990.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
A0A4D8YYD3 Uncharacterized protein7.5e-0990.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+S+FKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
A0A6P4AMW8 LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3-like4.4e-0993.94Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+SLFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
A0A7J7CLY8 Homeobox-leucine zipper protein HDG57.5e-0990.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M+SLFKECPHPDDKQR+KLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
SwissProt top hitse value%identityAlignment
A2ZAI7 Homeobox-leucine zipper protein ROC32.7e-1190.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
Q0J9X2 Homeobox-leucine zipper protein ROC26.1e-0872.73Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++ FKECPHPDDKQR +LS+ELGL+P QVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
Q336P2 Homeobox-leucine zipper protein ROC32.7e-1190.91Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKECPHPDDKQRLKLSQELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
Q6ZAR0 Homeobox-leucine zipper protein ROC16.1e-0872.73Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++ FKECPHPDDKQR +LS+ELGL+P QVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
Q9FJS2 Homeobox-leucine zipper protein HDG53.6e-0878.79Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKE PHPDDKQR +LS ELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
Arabidopsis top hitse value%identityAlignment
AT1G05230.1 homeodomain GLABROUS 22.2e-0869.7Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++ FKECPHPDDKQR +LS+EL L+P QVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
AT1G05230.2 homeodomain GLABROUS 22.2e-0869.7Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++ FKECPHPDDKQR +LS+EL L+P QVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
AT1G05230.3 homeodomain GLABROUS 22.2e-0869.7Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++ FKECPHPDDKQR +LS+EL L+P QVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
AT1G73360.1 homeodomain GLABROUS 119.7e-0969.7Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        ++S FKECPHPD+KQR +LS+ELGL PRQ+KF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
AT5G46880.1 homeobox-72.5e-0978.79Show/hide
Query:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF
        M++LFKE PHPDDKQR +LS ELGLKPRQVKF+
Subjt:  MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTGAAACTTAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAATTTTTC
mRNA sequenceShow/hide mRNA sequence
ATGGACAGTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTGAAACTTAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAATTTTTC
Protein sequenceShow/hide protein sequence
MDSLFKECPHPDDKQRLKLSQELGLKPRQVKFF