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MS002728 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002728
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold66:53310..53441
RNA-Seq ExpressionMS002728
SyntenyMS002728
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]4.3e-1472.73Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        +CAICLEEF +   CRVFPNCKHMFHT+CI+ WLG+N+TCP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1684.09Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-1684.09Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]1.1e-1475Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC ICLE+ G+R SCRVFPNCKH+FHT+CII+WL +N+TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]2.7e-1684.09Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein2.3e-1373.81Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPI
        EC ICLE+ G+R SCRVFPNCKH+FHT+CII+WL +N+TCPI
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPI

A0A444Y4D6 RING-type domain-containing protein3.7e-1168.18Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICLE+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

A0A444Y4F4 RING-type domain-containing protein2.8e-1165.91Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAIC+E+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

A0A445BYM1 RING-type domain-containing protein3.7e-1168.18Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICLE+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

A0A6P4BX25 E3 ubiquitin-protein ligase RING1-like2.8e-1165.91Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAIC+E+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

SwissProt top hitse value%identityAlignment
Q6NKR1 RING-H2 finger protein ATL282.3e-1054.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICL EF D  + R+   C+H FH+NCI  W  L++TCP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Q8LF65 RING-H2 finger protein ATL171.8e-1054.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC++CL EF D  S RV PNCKH FH +CI  W   + +CP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Q8RXX9 E3 ubiquitin-protein ligase ATL63.9e-1054.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICL EF D  + R+ P C H+FH +CI +WL  + TCP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Q9LSW9 RING-H2 finger protein ATL161.8e-1052.27Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC++CL EF D    R+ PNC H+FH +CI  WL  N  CP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Q9LUL6 Putative RING-H2 finger protein ATL612.3e-1056.82Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC +CL E  D    RV P+C H FH  CI SWL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Arabidopsis top hitse value%identityAlignment
AT2G35420.1 RING/U-box superfamily protein1.6e-1154.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICL EF D  + R+   C+H FH+NCI  W  L++TCP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

AT3G05200.1 RING/U-box superfamily protein2.8e-1154.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        ECAICL EF D  + R+ P C H+FH +CI +WL  + TCP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

AT3G14320.1 Zinc finger, C3HC4 type (RING finger) family protein1.6e-1156.82Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC +CL E  D    RV P+C H FH  CI SWL  N TCPICR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

AT4G15975.1 RING/U-box superfamily protein1.2e-1154.55Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC++CL EF D  S RV PNCKH FH +CI  W   + +CP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

AT5G43420.1 RING/U-box superfamily protein1.2e-1152.27Show/hide
Query:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR
        EC++CL EF D    R+ PNC H+FH +CI  WL  N  CP+CR
Subjt:  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAATGCGCGATTTGTTTGGAGGAATTTGGGGATAGGGCTTCGTGCAGAGTTTTCCCCAATTGCAAACATATGTTTCACACCAATTGCATAATCAGCTGGTTAGGGCTTAA
TCGAACTTGTCCGATATGTCGG
mRNA sequenceShow/hide mRNA sequence
GAATGCGCGATTTGTTTGGAGGAATTTGGGGATAGGGCTTCGTGCAGAGTTTTCCCCAATTGCAAACATATGTTTCACACCAATTGCATAATCAGCTGGTTAGGGCTTAA
TCGAACTTGTCCGATATGTCGG
Protein sequenceShow/hide protein sequence
ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR