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MS002729 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002729
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold66:57083..57625
RNA-Seq ExpressionMS002729
SyntenyMS002729
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060638.1 putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]6.6e-5362.81Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G TS     +DLEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDE
                WRE +E  R ++ +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI HWLK+N TCPICRCSI+ D+
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDE

KAG6577373.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]7.9e-4661.2Show/hide
Query:  PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD----LEAGEEEDN-----RDEILISRQARHGGDV----WREVLE
        P  NPPPS+LPFLT+FSI+ILIF+SI+IFSVLASFAII+L+Y IC+YLV PT   +    L A E   N     R  IL+S   RHGGDV    WRE LE
Subjt:  PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD----LEAGEEEDN-----RDEILISRQARHGGDV----WREVLE

Query:  RK--REVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI
        RK  RE   KK     V YGS E       A    +DCAICLEDFE GELCQIFPVCNHIFHY CI  WLK+N TCPICRCSI
Subjt:  RK--REVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI

KAG6600727.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4257.89Show/hide
Query:  MIPQAL-AVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDNRDEILISRQ--ARHGGDVWREV
        MIPQAL  VPQSNPPPS LPFLTAFSIVI+I ISIVIFS+LASF+III I+++CQYL+G T+      D+EAGE   N+++ +  R   +R+  ++WRE 
Subjt:  MIPQAL-AVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDNRDEILISRQ--ARHGGDVWREV

Query:  LER-------KREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI
        LER       +R  +  K MA  VRYG        E+AA Y  DCAICLE+FE+GE CQIF VC HIFHYSCI  WL+RN TCPICR  I
Subjt:  LER-------KREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI

KAG7027690.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-4458.6Show/hide
Query:  PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD----LEAGEEEDN-----RDEILISRQARHGGDV----WREVLE
        P  NPPPS+LPFLT+FSI+ILIF+SI+IFSVLASFAII+L+Y IC+YLV PT   +    L A E   N     R  IL+S   RHGGDV    WRE LE
Subjt:  PQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTD----LEAGEEEDN-----RDEILISRQARHGGDV----WREVLE

Query:  RK--REVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKD
        RK  RE   +K     V YGS E       A    +DCAICLEDFE GELCQIFPVCNHIFHY CI  WLK+N TCPIC  SI+ +
Subjt:  RK--REVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKD

TYK02232.1 putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]2.4e-3456.52Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G TS     +DLEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKR
                WRE +E  R ++ +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPV            WLKR
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKR

TrEMBL top hitse value%identityAlignment
A0A0A0L6M6 RING-type domain-containing protein9.4e-5362.12Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFI+I+IFSV+ASFAII+ IY+IC+YL+G TS     ++LEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKD
                WRE +E  R ++ +KV AAPV YGS E       AA  CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI HWLK+N TCPICRCSI+ D
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKD

A0A251PMJ1 RING-type domain-containing protein1.2e-2036.84Show/hide
Query:  PPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGP---TSFTDLEAGEE----EDNRDE-----------ILISRQARHGGDVWREVLE
        PP +   LT    +I +++ I+ FS++ S  +I L Y++C+++  P       D EAG+E    + NR+E           +L + +     D   EVLE
Subjt:  PPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGP---TSFTDLEAGEE----EDNRDE-----------ILISRQARHGGDVWREVLE

Query:  --------RKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL
                R RE L +  +  P+ YGS E+EM        C DC IC+EDFE+ +LCQ+FP CNH FH  C++ WLK++ TCPICR S+L
Subjt:  --------RKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL

A0A5A7UZF7 Putative RING-H2 finger protein ATL193.2e-5362.81Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G TS     +DLEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDE
                WRE +E  R ++ +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPVCNHIFHYSCI HWLK+N TCPICRCSI+ D+
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDE

A0A5D3BTV2 Putative RING-H2 finger protein ATL191.1e-3456.52Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G TS     +DLEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKR
                WRE +E  R ++ +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FPV            WLKR
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKR

E5GBS2 Uncharacterized protein5.7e-3458.93Show/hide
Query:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV
        MIPQAL VPQSNPPPS+LPFLTAFSIVI+IFISI+IFSV+ASFAIII IYIIC+YL+G TS     +DLEAGE  +N     R  IL++  + + HG D+
Subjt:  MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSF----TDLEAGEEEDN-----RDEILIS--RQARHGGDV

Query:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPV
                WRE +E  R ++ +KV AAPV YGS E+  +       CIDCAICLEDFE+GELCQ FP+
Subjt:  --------WREVLERKREVLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPV

SwissProt top hitse value%identityAlignment
Q67YI6 RING-H2 finger protein ATL654.2e-1050Show/hide
Query:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL
        AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Subjt:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL

Q8W571 RING-H2 finger protein ATL321.6e-0945.83Show/hide
Query:  IDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI
        ++CAICL + E  E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Subjt:  IDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSI

Q9C919 Putative RING-H2 finger protein ATL192.5e-1030.46Show/hide
Query:  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLEAG-EEEDNRDEILISRQARHGG----DVWREVLER--KRE
        S+     +  ++   + + I + I++  ++A+ A+I++IY+I   ++ P   T    DLE G +    R  I+        G    D  RE  +R  K+ 
Subjt:  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLEAG-EEEDNRDEILISRQARHGG----DVWREVLER--KRE

Query:  VLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR
        V+E  +    V  G+ E + E  + +    +CAICL  +   E C++FPVC HI+H  CI  WLK + TCP CR
Subjt:  VLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR

Q9FGJ6 RING-H2 finger protein ATL794.2e-1050Show/hide
Query:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES
        +CAICL +FE GE  Q+   C H FH  CIH WL   ++CP CR SI    S
Subjt:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES

Q9SRM0 RING-H2 finger protein ATL661.2e-0946.15Show/hide
Query:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES
        +C ICL  FE GE  ++ P C+H +H  C+  WLK  ++CP+CR SI  D S
Subjt:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES

Arabidopsis top hitse value%identityAlignment
AT1G53010.1 RING/U-box superfamily protein1.8e-1130.46Show/hide
Query:  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLEAG-EEEDNRDEILISRQARHGG----DVWREVLER--KRE
        S+     +  ++   + + I + I++  ++A+ A+I++IY+I   ++ P   T    DLE G +    R  I+        G    D  RE  +R  K+ 
Subjt:  SNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFT----DLEAG-EEEDNRDEILISRQARHGG----DVWREVLER--KRE

Query:  VLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR
        V+E  +    V  G+ E + E  + +    +CAICL  +   E C++FPVC HI+H  CI  WLK + TCP CR
Subjt:  VLEKKVMAAPVRYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICR

AT3G11110.1 RING/U-box superfamily protein8.8e-1146.15Show/hide
Query:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES
        +C ICL  FE GE  ++ P C+H +H  C+  WLK  ++CP+CR SI  D S
Subjt:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES

AT3G18930.1 RING/U-box superfamily protein3.0e-1150Show/hide
Query:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL
        AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Subjt:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL

AT3G18930.2 RING/U-box superfamily protein3.0e-1150Show/hide
Query:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL
        AAN C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +IL
Subjt:  AANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSIL

AT5G47610.1 RING/U-box superfamily protein3.0e-1150Show/hide
Query:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES
        +CAICL +FE GE  Q+   C H FH  CIH WL   ++CP CR SI    S
Subjt:  DCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCTCAGGCTCTTGCTGTTCCACAATCCAACCCTCCTCCTTCCCTCCTCCCCTTCCTCACCGCGTTCTCGATCGTCATCCTCATCTTCATCTCCATCGTCATCTT
CTCCGTGCTCGCCTCGTTTGCCATCATCATCCTCATCTACATCATTTGCCAATACCTGGTCGGTCCGACGAGCTTCACCGACCTCGAAGCTGGCGAGGAAGAGGACAACC
GAGATGAGATTCTGATATCTCGTCAAGCTCGGCACGGTGGAGATGTGTGGAGGGAGGTTTTGGAGAGGAAGAGGGAGGTTTTGGAGAAAAAAGTTATGGCGGCTCCTGTG
AGGTATGGGAGCCCCGAAATGGAAATGGAAATGGAAATGGCAGCCAATTATTGCATTGATTGTGCAATTTGTTTGGAGGATTTTGAAAGTGGAGAGCTTTGCCAGATTTT
TCCTGTGTGTAATCACATTTTTCATTATTCTTGCATTCATCATTGGTTGAAGAGGAACACGACTTGCCCCATTTGTCGATGTTCCATTTTGAAAGACGAGTCT
mRNA sequenceShow/hide mRNA sequence
ATGATTCCTCAGGCTCTTGCTGTTCCACAATCCAACCCTCCTCCTTCCCTCCTCCCCTTCCTCACCGCGTTCTCGATCGTCATCCTCATCTTCATCTCCATCGTCATCTT
CTCCGTGCTCGCCTCGTTTGCCATCATCATCCTCATCTACATCATTTGCCAATACCTGGTCGGTCCGACGAGCTTCACCGACCTCGAAGCTGGCGAGGAAGAGGACAACC
GAGATGAGATTCTGATATCTCGTCAAGCTCGGCACGGTGGAGATGTGTGGAGGGAGGTTTTGGAGAGGAAGAGGGAGGTTTTGGAGAAAAAAGTTATGGCGGCTCCTGTG
AGGTATGGGAGCCCCGAAATGGAAATGGAAATGGAAATGGCAGCCAATTATTGCATTGATTGTGCAATTTGTTTGGAGGATTTTGAAAGTGGAGAGCTTTGCCAGATTTT
TCCTGTGTGTAATCACATTTTTCATTATTCTTGCATTCATCATTGGTTGAAGAGGAACACGACTTGCCCCATTTGTCGATGTTCCATTTTGAAAGACGAGTCT
Protein sequenceShow/hide protein sequence
MIPQALAVPQSNPPPSLLPFLTAFSIVILIFISIVIFSVLASFAIIILIYIICQYLVGPTSFTDLEAGEEEDNRDEILISRQARHGGDVWREVLERKREVLEKKVMAAPV
RYGSPEMEMEMEMAANYCIDCAICLEDFESGELCQIFPVCNHIFHYSCIHHWLKRNTTCPICRCSILKDES