CuGenDBv2

Gene ID	MS002737
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	scaffold66:118506..122227
RNA-Seq Expression	MS002737
Synteny	MS002737
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

4.6e-150

89.75

Show/hide

Query:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN
        +   ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP S  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTN
Subjt:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN

Query:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV
        FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+V
Subjt:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV

Query:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR
        PELVDFLISSL K VGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGR
Subjt:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR

Query:  LKIGEINSTKKGKFSVELIRYV
        LKIGEINSTKKGKF+VELIRYV
Subjt:  LKIGEINSTKKGKFSVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

1.5e-148

87.89

Show/hide

Query:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN
        +    T+IGALWSLR A+Q SSFR PL +NL+   FH+ RFP S  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTN
Subjt:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN

Query:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV
        FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+V
Subjt:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV

Query:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR
        PELVDFLISSL K VGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGR
Subjt:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR

Query:  LKIGEINSTKKGKFSVELIRYV
        LKIGEINSTKKGKF+VELIRYV
Subjt:  LKIGEINSTKKGKFSVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

5.6e-164

97.8

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        DFLISSL K VGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
Subjt:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKFSVELIRYV
Subjt:  EINSTKKGKFSVELIRYV

XP_022142745.1 uncharacterized protein LOC111012786 isoform X2 [Momordica charantia]

3.1e-162

97.48

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Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        DFLISSL K VGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLI SGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
Subjt:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKFSVELIRYV
Subjt:  EINSTKKGKFSVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

4.2e-151

89.72

Show/hide

Query:  MAATSIGALWSLRRAAQASSFRIPLALN---LSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        MAATSIGA WSLRRAAQ+SSFR PLA+N   LSFH+ARFP SP  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNF
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALN---LSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP
        LTPPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVP

Query:  ELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRL
        ELVDFL SSL K VGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRL
Subjt:  ELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRL

Query:  KIGEINSTKKGKFSVELIRYV
        KIGEINSTKKGKF+VELIRYV
Subjt:  KIGEINSTKKGKFSVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

2.2e-150

89.75

Show/hide

Query:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN
        +   ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARFP S  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTN
Subjt:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN

Query:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV
        FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+V
Subjt:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV

Query:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR
        PELVDFLISSL K VGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGR
Subjt:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR

Query:  LKIGEINSTKKGKFSVELIRYV
        LKIGEINSTKKGKF+VELIRYV
Subjt:  LKIGEINSTKKGKFSVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

7.2e-149

87.89

Show/hide

Query:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN
        +    T+IGALWSLR A+Q SSFR PL +NL+   FH+ RFP S  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTN
Subjt:  LTMAATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN

Query:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV
        FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDII+Q E GAQVV+V
Subjt:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLV

Query:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR
        PELVDFLISSL K VGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGR
Subjt:  PELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGR

Query:  LKIGEINSTKKGKFSVELIRYV
        LKIGEINSTKKGKF+VELIRYV
Subjt:  LKIGEINSTKKGKFSVELIRYV

A0A6J1CLT4 uncharacterized protein LOC111012786 isoform X2

1.5e-162

97.48

Show/hide

Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        DFLISSL K VGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLI SGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
Subjt:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKFSVELIRYV
Subjt:  EINSTKKGKFSVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

2.7e-164

97.8

Show/hide

Query:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
        MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP  P   SGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP
Subjt:  MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTP

Query:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
        PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV
Subjt:  PVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELV

Query:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
        DFLISSL K VGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG
Subjt:  DFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG

Query:  EINSTKKGKFSVELIRYV
        EINSTKKGKFSVELIRYV
Subjt:  EINSTKKGKFSVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

7.2e-149

Show/hide

Query:  LTMAATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        +  A  SIGALWSLRRAAQ+SS R PLA+NL   SFH+ARFP SP  P   SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  LTMAATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSP-PPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVL
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDIILQ E GAQVV+
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVL

Query:  VPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKG
        VPELVDFL+SSLHK VGNVTVSCTRIPLT LDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT +TKNGT LKTGD+VSVSGKG
Subjt:  VPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKG

Query:  RLKIGEINSTKKGKFSVELIRYV
        RLKIGEIN TKKGKF+VELIRYV
Subjt:  RLKIGEINSTKKGKFSVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

8.2e-17

30.09

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   E   
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA

Query:  QVVLVPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSV
        Q+++  +  DF+ + L +  G   VS  +I L+ L+      +  +   +SLR+DA+ ++  + SR K   L+ +G V+VNW  V      +  GD++S+
Subjt:  QVVLVPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSV

Query:  SGKGRLKIGEI-NSTKKGKFSVELIR
         G GR  + +I   TKK K+ V   R
Subjt:  SGKGRLKIGEI-NSTKKGKFSVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

1.4e-112

64.83

Show/hide

Query:  MAATSIGALWSLRRAAQAS--------SFRIPLALNLSFHQARFPPSPPPYTVSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRE
        MA TS+   W + R A  S        + +  L  NLS       P+  P   S +  C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+RE
Subjt:  MAATSIGALWSLRRAAQAS--------SFRIPLALNLSFHQARFPPSPPPYTVSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRE

Query:  VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA
        VLHT+FLTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++Q E GA
Subjt:  VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGA

Query:  QVVLVPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSV
        QV++VPELVDF++++L K VGNV V+C++IPL AL+YEPP+T +F T+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  VTKNGT +KTGDVVSV
Subjt:  QVVLVPELVDFLISSLHKVVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSV

Query:  SGKGRLKIGEINSTKKGKFSVELIRYV
        SGKGRLKIGEIN TKKGKF+VE+IRY+
Subjt:  SGKGRLKIGEINSTKKGKFSVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CTAACAATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGCCCTAAACCTCTCCTTCCACCAGGCCCG
TTTTCCTCCTTCGCCTCCACCCTATACTGTTTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTTTACTCAACGGAGTAGGAGATAAAGGTGTTA
TTGTAGATGTGAAGCATATTCTTGTGATGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCT
ATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACAT
AATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGATCAATTCTTGGTACAGGAATTGCTAGGGAAAAGCTTGGCGATA
TCATACTCCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCACAAGGTAGTTGGTAATGTCACAGTTTCTTGTACG
AGGATTCCGTTGACAGCTCTTGATTATGAACCACCAAAGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGGTTCAAGATTTC
ACGGTCCAAACTAGTGGATTTAATCAGCAGCGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGAAGACTGGTGATGTTGTTTCTGTTAGTG
GTAAAGGCAGACTAAAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTG

mRNA sequence

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Protein sequence

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LTMAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPPPYTVSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLA
IQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELVDFLISSLHKVVGNVTVSCT
RIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKFSVELIRYV

MS002737 (gene) of Bitter gourd (TR) v1 genome