; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002741 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002741
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L33-like
Genome locationscaffold66:180177..181249
RNA-Seq ExpressionMS002741
SyntenyMS002741
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR018264 - Ribosomal protein L33, conserved site
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577004.1 hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5376.58Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL N ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSI  GSVICMAKRYAPNTTKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

KAG7015026.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-5477.22Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL N ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSIR GSVICMAKRYAPNTTKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

XP_022142796.1 uncharacterized protein LOC111012832 [Momordica charantia]4.3e-7291.86Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK--------------GSLSLSARERSIRRGSVICMAKRYAPNTTKR
        MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK              GSLSLSARERSIRRGSVICMAKRYAPNTTKR
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK--------------GSLSLSARERSIRRGSVICMAKRYAPNTTKR

Query:  KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
Subjt:  KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

XP_022922690.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata]9.9e-5375.32Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

XP_023552499.1 uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]3.4e-5375.95Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSIR GSV CMAKRYAPNTTKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

TrEMBL top hitse value%identityAlignment
A0A6J1CN96 uncharacterized protein LOC1110128322.1e-7291.86Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK--------------GSLSLSARERSIRRGSVICMAKRYAPNTTKR
        MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK              GSLSLSARERSIRRGSVICMAKRYAPNTTKR
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLK--------------GSLSLSARERSIRRGSVICMAKRYAPNTTKR

Query:  KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
Subjt:  KRLSRKRGGDPGKKKKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

A0A6J1E445 uncharacterized protein LOC111430611 isoform X11.4e-5275.16Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEV
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEV
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEV

A0A6J1E4T6 uncharacterized protein LOC111430611 isoform X24.8e-5375.32Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R   + ALSCG RNRFL + ASS PPSF++F  LSFSA+LSLS+V N+K SLS SARERSIR GSVICMA+RYAPN TKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        KKTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTEVK
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

A0A6J1J250 uncharacterized protein LOC111482725 isoform X24.5e-5173.42Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R     AL CG RNRFL + ASS PPSF++F  LSFSA+LSL +V N+K SLS SARERSIR GSVICMA+RYAPNTTKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        +KTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTE K
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

A0A6J1J566 uncharacterized protein LOC111482725 isoform X14.5e-5173.42Show/hide
Query:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK
        MA  I+R     AL CG RNRFL + ASS PPSF++F  LSFSA+LSL +V N+K SLS SARERSIR GSVICMA+RYAPNTTKRKRLSRKRGGDP KK
Subjt:  MATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKK

Query:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK
        +KTRRKG ++DFKI+RLSS AGTGFFY K+KS+ MADKI+LQK+DPL KRHVLFTE K
Subjt:  KKTRRKGRKRDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK

SwissProt top hitse value%identityAlignment
B4S2C4 50S ribosomal protein L334.3e-0651.11Show/hide
Query:  VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK
        ++L S+AGTGFFY   K+K NM  K++++KYDP+ ++HV+F E K
Subjt:  VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK

Q3IFE7 50S ribosomal protein L335.6e-0653.33Show/hide
Query:  VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK
        +RL S AGTGFFY   K+K NM +K++++K+DP  ++HVLF E K
Subjt:  VRLSSAAGTGFFYVKQKSK-NMADKIQLQKYDPLEKRHVLFTEVK

Q3YSN4 50S ribosomal protein L339.5e-0646.15Show/hide
Query:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK
        +K    +V+L+S+A TGFFYVK+++ K + +K+  +KYDP+ ++HVLF+E K
Subjt:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK

Q5FFJ4 50S ribosomal protein L333.8e-0752.17Show/hide
Query:  IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK
        +V+L+S+AGTG+FYVK+++ K + +K+  +KYDP+ ++HVLFTE K
Subjt:  IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK

Q5HBV6 50S ribosomal protein L333.8e-0752.17Show/hide
Query:  IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK
        +V+L+S+AGTG+FYVK+++ K + +K+  +KYDP+ ++HVLFTE K
Subjt:  IVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK

Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein7.7e-1161.54Show/hide
Query:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK
        RK+ F  +RL SAAGTGFFYVK+KS K + +K++ +KYDP   RHVLFTE K
Subjt:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK

AT5G18790.1 Ribosomal protein L33 family protein7.7e-1161.54Show/hide
Query:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK
        RK+ F  +RL SAAGTGFFYVK+KS K + +K++ +KYDP   RHVLFTE K
Subjt:  RKRDFKIVRLSSAAGTGFFYVKQKS-KNMADKIQLQKYDPLEKRHVLFTEVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATGGCGACAATTATTCAAAGGTTTCGTTCGGAGTTGGCGCTTTCTTGTGGGTTAAGGAACCGATTTCTCAATAATCCCGCGTCTTCCGCTCCTCCAAGCTTCCTCAC
TTTCATGTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCCTCGTCTCCAATCTCAAAGGATCGTTGTCACTAAGCGCTCGGGAGAGATCAATCCGTCGTGGTTCCGTAA
TTTGTATGGCCAAAAGATATGCTCCCAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGGCAAGAAAAAGAAGACGAGGAGAAAAGGGAGAAAG
AGAGATTTCAAAATAGTCCGACTCTCCTCGGCTGCGGGGACTGGCTTTTTCTATGTGAAGCAGAAGAGCAAGAACATGGCTGACAAGATTCAGCTCCAGAAATATGACCC
TCTTGAAAAACGTCATGTTCTGTTCACTGAAGTCAAG
mRNA sequenceShow/hide mRNA sequence
AAGATGGCGACAATTATTCAAAGGTTTCGTTCGGAGTTGGCGCTTTCTTGTGGGTTAAGGAACCGATTTCTCAATAATCCCGCGTCTTCCGCTCCTCCAAGCTTCCTCAC
TTTCATGTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCCTCGTCTCCAATCTCAAAGGATCGTTGTCACTAAGCGCTCGGGAGAGATCAATCCGTCGTGGTTCCGTAA
TTTGTATGGCCAAAAGATATGCTCCCAACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGGCAAGAAAAAGAAGACGAGGAGAAAAGGGAGAAAG
AGAGATTTCAAAATAGTCCGACTCTCCTCGGCTGCGGGGACTGGCTTTTTCTATGTGAAGCAGAAGAGCAAGAACATGGCTGACAAGATTCAGCTCCAGAAATATGACCC
TCTTGAAAAACGTCATGTTCTGTTCACTGAAGTCAAG
Protein sequenceShow/hide protein sequence
KMATIIQRFRSELALSCGLRNRFLNNPASSAPPSFLTFMSLSFSASLSLSLVSNLKGSLSLSARERSIRRGSVICMAKRYAPNTTKRKRLSRKRGGDPGKKKKTRRKGRK
RDFKIVRLSSAAGTGFFYVKQKSKNMADKIQLQKYDPLEKRHVLFTEVK