CuGenDBv2

Gene ID	MS002749
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II protein D1
Genome location	scaffold66:256372..256610
RNA-Seq Expression	MS002749
Synteny	MS002749
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0009507 - chloroplast (cellular component) GO:0009523 - photosystem II (cellular component) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEX95796.1 photosystem II protein D1 [Ledebouria cordifolia]

1.6e-19

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

KAF7048875.1 hypothetical protein CFC21_057534, partial [Triticum aestivum]

2.1e-19

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

KJB15227.1 hypothetical protein B456_002G165800 [Gossypium raimondii]

9.3e-20

66.67

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FTVL      FNLNGFNFNQS+VDS + VI  WA++I C NL MEVMHERNAH+FPL L  +E PS NG
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

QFV17782.1 photosystem II protein D1 [Ranunculus sceleratus]

1.6e-19

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

YP_009752646.1 photosystem II protein D1 [Ampelosycios humblotii]

1.6e-19

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

TrEMBL top hits

e value

%identity

Alignment

A0A0D2MBZ4 Uncharacterized protein

4.5e-20

66.67

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FTVL      FNLNGFNFNQS+VDS + VI  WA++I C NL MEVMHERNAH+FPL L  +E PS NG
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

A0A5P9RWU4 Photosystem II protein D1

7.7e-20

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

A0A5P9RZW9 Photosystem II protein D1

7.7e-20

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

A0A6H0ETP7 Photosystem II protein D1

7.7e-20

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

H2FAW3 Photosystem II protein D1

7.7e-20

70.24

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L VVEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

1.3e-21

67.86

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  +EVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

P05337 Photosystem II protein D1

1.3e-21

67.86

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  VEVP+ING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

P10510 Photosystem II protein D1

6.0e-22

69.05

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  VEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

P12463 Photosystem II protein D1

6.0e-22

69.05

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  VEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

Q2QDA8 Photosystem II protein D1

6.0e-22

69.05

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  VEVPSING
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

4.7e-22

66.67

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Query:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING
        SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL MEVMHERNAH+FPL L  VE PS NG
Subjt:  SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

Sequences

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CDS sequence

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TCTTTACATTTCTTCCTAGCTGCTTGGCTTGCAGGAGGTATCTCGTTCACCGTTTTAACTTTCAACTTAAATGGTTTTAATTTCAACCAATCTGTAGTTGATAGTGTCAC
GGTAATTTATATCTGGGCTAATGTTATTAAGTGTGTTAATCTTGATATGGAAGTTATGCATGAACGTAATGCTCACAGCTTCCCTCTACACCTAACTGTGGTTGAAGTTC
CATCTATCAATGGA

mRNA sequence

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Protein sequence

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SLHFFLAAWLAGGISFTVLTFNLNGFNFNQSVVDSVTVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

MS002749 (gene) of Bitter gourd (TR) v1 genome