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MS002752 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002752
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationscaffold66:278758..279173
RNA-Seq ExpressionMS002752
SyntenyMS002752
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058841.1 Transcription elongation factor 1 isoform 2 [Cucumis melo var. makuwa]3.4e-2898.41Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITGI
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

KAD4982421.1 hypothetical protein E3N88_19092 [Mikania micrantha]1.3e-2796.77Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITG
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTT+TG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITG

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]2.8e-2795.24Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]5.7e-2896.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

XP_024017449.1 transcription elongation factor 1 homolog isoform X2 [Morus notabilis]2.8e-2795.24Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog1.4e-2795.24Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

A0A5A7UZC1 Transcription elongation factor 1 homolog1.6e-2898.41Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITGI
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

A0A5N6NM69 Transcription elongation factor 1 homolog6.2e-2896.77Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITG
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTT+TG
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITG

A0A6J1CNR1 Transcription elongation factor 1 homolog2.8e-2896.83Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

W9R774 Transcription elongation factor 1 homolog1.4e-2795.24Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.3e-1151.61Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT

P36053 Transcription elongation factor 19.2e-1350.79Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I  +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

P60002 Transcription elongation factor 1 homolog1.3e-1151.61Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT

Q8LEF3 Transcription elongation factor 1 homolog2.8e-2580.95Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

Q8LHP0 Transcription elongation factor 1 homolog2.7e-2888.89Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+  +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein2.0e-2680.95Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTIT +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCG
CATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATT
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCG
CATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATT
Protein sequenceShow/hide protein sequence
MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGI