; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002756 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002756
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold66:312790..313937
RNA-Seq ExpressionMS002756
SyntenyMS002756
Gene Ontology termsNA
InterPro domainsIPR039495 - TATA box-binding protein-associated factor RNA polymerase I subunit A-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600392.1 hypothetical protein SDJN03_05625, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6177.78Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE M D  V+EAEYG  +   RKRK D  ADG++DGRRA  MK++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

KAG7031054.1 hypothetical protein SDJN02_05093 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6177.78Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE M D  V+EAEYG  +   RKRK D  ADG++DGRRA  MK++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

XP_022142927.1 uncharacterized protein LOC111012919 [Momordica charantia]1.3e-79100Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

XP_022941583.1 uncharacterized protein LOC111446895 [Cucurbita moschata]4.5e-6177.12Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE + D  V+EAEYG  +   RKRK D  ADG++DGRRA  MK++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

XP_023536647.1 uncharacterized protein LOC111797853 [Cucurbita pepo subsp. pepo]1.0e-6076.47Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE M D  V+EAEYG  +   RKRK D   DG++DGRRA  M+++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

TrEMBL top hitse value%identityAlignment
A0A0A0KVM2 Uncharacterized protein3.1e-6073.75Show/hide
Query:  LRQTARRMEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVL
        + + A++MEPE+MAD  +VEAEYG N P +RKRKAD  AD  +DGRRATLMKR+ LSLT+PSFV+GL PKMVR ENR+TLRNVL KL+RQQNWVEASGVL
Subjt:  LRQTARRMEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVL

Query:  SMLLKGTLRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        SMLL+GTLRD SPI+NRLKY ASMELLK IEGDRMRP+RI+H+YD WM+K G +K+WPIE
Subjt:  SMLLKGTLRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

A0A1S3BS63 uncharacterized protein LOC1034929167.7e-5976.47Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE+MAD  V+E EYG   P +RKRKAD  ADG +D RRATLMKR+ LSLTKPSFV+GL PKMVR ENR+TLRN L KL+RQQNWVEASGVLSMLL+GT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRD SPI+NRLKY ASMELLKHIEGDRMRP+RI+H+YD WM+K GS+K+WPIE
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

A0A6J1CPA4 uncharacterized protein LOC1110129196.1e-80100Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

A0A6J1FSH8 uncharacterized protein LOC1114468952.2e-6177.12Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE + D  V+EAEYG  +   RKRK D  ADG++DGRRA  MK++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

A0A6J1IWZ8 uncharacterized protein LOC1114793314.8e-6177.12Show/hide
Query:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT
        MEPE M D  V+EAE+G  +   RKRK D  ADG++DGRRA  MK++TL+LTKPSFV+G+GPKM+R ENR TLRNVLRKL+ QQNWVEASGVLSMLLKGT
Subjt:  MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGT

Query:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE
        LRDRSPI+NRLKY  SMELLKHIEGDRMRPNRIKH+YDNWMRKIGSMK WP+E
Subjt:  LRDRSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G53200.1 unknown protein1.2e-1637.31Show/hide
Query:  VEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGTLRDRSPIKNRL
        VE E   +K    K K   V+    D       KR+     KPS+++ +GPK  R E    L  +LR+LLR ++W +AS VLS+L+KGT+ D  P  NRL
Subjt:  VEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGTLRDRSPIKNRL

Query:  KYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIG
        KY A ++++ H E ++ + + I  +YD W+ +IG
Subjt:  KYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGAGGCAGACTGCAAGAAGAATGGAGCCGGAAAAAATGGCGGACGATCATGTCGTGGAAGCCGAATACGGTTTCAACAAACCCAGAAATCGGAAAAGAAAGGCTGATAT
GGTAGCCGACGGTACTAGTGATGGCCGGCGAGCAACGCTAATGAAAAGAATGACATTGTCTTTGACAAAGCCATCGTTTGTTATGGGGCTTGGACCCAAGATGGTGAGGG
TAGAAAATCGAGTTACATTGCGGAATGTGTTGCGCAAACTTCTGAGGCAGCAGAATTGGGTAGAAGCAAGTGGAGTACTGAGCATGTTACTGAAAGGGACTTTGCGGGAT
AGATCTCCTATTAAGAATCGATTGAAGTATTTGGCTTCTATGGAGCTTCTTAAGCATATAGAAGGTGATCGTATGAGACCAAATAGGATCAAGCACGTCTATGACAACTG
GATGAGGAAGATTGGATCAATGAAGAATTGGCCAATTGAG
mRNA sequenceShow/hide mRNA sequence
CTGAGGCAGACTGCAAGAAGAATGGAGCCGGAAAAAATGGCGGACGATCATGTCGTGGAAGCCGAATACGGTTTCAACAAACCCAGAAATCGGAAAAGAAAGGCTGATAT
GGTAGCCGACGGTACTAGTGATGGCCGGCGAGCAACGCTAATGAAAAGAATGACATTGTCTTTGACAAAGCCATCGTTTGTTATGGGGCTTGGACCCAAGATGGTGAGGG
TAGAAAATCGAGTTACATTGCGGAATGTGTTGCGCAAACTTCTGAGGCAGCAGAATTGGGTAGAAGCAAGTGGAGTACTGAGCATGTTACTGAAAGGGACTTTGCGGGAT
AGATCTCCTATTAAGAATCGATTGAAGTATTTGGCTTCTATGGAGCTTCTTAAGCATATAGAAGGTGATCGTATGAGACCAAATAGGATCAAGCACGTCTATGACAACTG
GATGAGGAAGATTGGATCAATGAAGAATTGGCCAATTGAG
Protein sequenceShow/hide protein sequence
LRQTARRMEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGLGPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGTLRD
RSPIKNRLKYLASMELLKHIEGDRMRPNRIKHVYDNWMRKIGSMKNWPIE