CuGenDBv2

Gene ID	MS002826
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S25
Genome location	scaffold359:32936..34817
RNA-Seq Expression	MS002826
Synteny	MS002826
Gene Ontology terms	GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004977 - Ribosomal protein S25

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140903.1 40S ribosomal protein S25-2 [Cucumis sativus]

4.7e-46

94.39

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+TPSILSDR+R+NGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

XP_008391134.1 40S ribosomal protein S25-like [Malus domestica]

4.7e-46

96.26

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLI+AH+SQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]

9.5e-47

98.13

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

XP_008456601.1 PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]

2.1e-46

96.26

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

XP_022142384.1 40S ribosomal protein S25-2 [Momordica charantia]

1.9e-47

100

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B608 40S ribosomal protein S25

4.6e-47

98.13

Show/hide

Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

A0A1S3C4W3 40S ribosomal protein S25

1.0e-46

96.26

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

A0A5D3CKR9 40S ribosomal protein S25

1.0e-46

96.26

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

A0A6J1BYI5 40S ribosomal protein S25

1.0e-46

96.26

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

A0A6J1CLE7 40S ribosomal protein S25

9.2e-48

100

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

SwissProt top hits

e value

%identity

Alignment

P46301 40S ribosomal protein S25

1.9e-45

88.79

Show/hide

Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFD+ TYDKLLSEAPKYKLITPS+LSDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

Q8GYL5 40S ribosomal protein S25-3

1.9e-45

89.62

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLLSEAPK+KLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATN
        YTRAT+
Subjt:  YTRATN

Q9SIK2 40S ribosomal protein S25-2

2.2e-46

89.72

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

Q9SIW5 40S ribosomal protein S25-1

3.0e-43

86.67

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKL+SEAPK+KLITPSILSDRLRINGSLAR+AI+DLM +G+IR++S HSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRAT
         TRAT
Subjt:  YTRAT

Q9T029 40S ribosomal protein S25-4

2.4e-45

87.85

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

Arabidopsis top hits

e value

%identity

Alignment

AT2G21580.1 Ribosomal protein S25 family protein

1.6e-47

89.72

Show/hide

Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

AT2G21580.2 Ribosomal protein S25 family protein

1.1e-45

88.79

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

AT4G34555.1 Ribosomal protein S25 family protein

1.3e-46

89.62

Show/hide

Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLLSEAPK+KLITPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATN
        YTRAT+
Subjt:  YTRATN

AT4G39200.1 Ribosomal protein S25 family protein

1.7e-46

87.85

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

AT4G39200.2 Ribosomal protein S25 family protein

1.2e-44

86.92

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Query:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI
        APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLITPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQI
Subjt:  APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQI

Query:  YTRATNT
        YTRATNT
Subjt:  YTRATNT

Sequences

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CDS sequence

Show/hide CDS sequence

CAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCATCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGT
GAATAACTTGGTATTGTTTGATCAGGGAACCTACGACAAGCTTCTTTCAGAAGCTCCAAAGTACAAGCTTATCACTCCTTCCATCCTATCCGACAGATTGAGGATCAATG
GATCATTGGCACGTCGGGCAATTAAGGATTTGATGGCGAGAGGTTCAATTAGGCTCATATCGGCTCATTCTAGCCAGCAGATATACACTAGAGCCACAAATACA

mRNA sequence

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Protein sequence

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QAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

MS002826 (gene) of Bitter gourd (TR) v1 genome