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MS002829 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002829
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGermin-like protein
Genome locationscaffold359:48407..48631
RNA-Seq ExpressionMS002829
SyntenyMS002829
Gene Ontology termsGO:0048046 - apoplast (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR006045 - Cupin 1
IPR011051 - RmlC-like cupin domain superfamily
IPR014710 - RmlC-like jelly roll fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652810.1 hypothetical protein Csa_022893 [Cucumis sativus]2.1e-1363.89Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM-----FSSGISDDVLANVFNTHVAIIRN
        QTLQVGD+FLFPKGL+HFQ N DP NSATAIA F  AN G V++     F+SGISD+VLA  F T VA+I++
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM-----FSSGISDDVLANVFNTHVAIIRN

XP_004139583.2 putative germin-like protein 9-2 [Cucumis sativus]2.1e-1363.89Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM-----FSSGISDDVLANVFNTHVAIIRN
        QTLQVGD+FLFPKGL+HFQ N DP NSATAIA F  AN G V++     F+SGISD+VLA  F T VA+I++
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM-----FSSGISDDVLANVFNTHVAIIRN

XP_008463986.1 PREDICTED: germin-like protein 9-3 [Cucumis melo]7.8e-1669.86Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD+FLFPKGL+HFQFN+DP NSATAIA F  ANAG VS+    F+SGISD+VLA  F T VAII++ K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK

XP_022142670.1 putative germin-like protein 9-2 [Momordica charantia]5.2e-2079.45Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD FLFPKGLLHFQFNSDPLNSATAIAAF  ANAG V    S+FSSGISDDVLA  FNTHVA++R  K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK

XP_038893494.1 putative germin-like protein 9-2 [Benincasa hispida]1.7e-1568.49Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD+F+FPKGL+HFQFN+DP NSATAIAAF  AN G VS+    F+SGISD+VLA  F T VA+IR+ K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK

TrEMBL top hitse value%identityAlignment
A0A0A0LSQ3 Germin-like protein7.9e-1464.79Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRN
        QTLQVGD+FLFPKGL+HFQ N DP NSATAIA F  AN G V++    F+SGISD+VLA  F T VA+I++
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRN

A0A1S3CKF8 Germin-like protein3.8e-1669.86Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD+FLFPKGL+HFQFN+DP NSATAIA F  ANAG VS+    F+SGISD+VLA  F T VAII++ K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK

A0A5A7SY36 Germin-like protein3.8e-1669.86Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD+FLFPKGL+HFQFN+DP NSATAIA F  ANAG VS+    F+SGISD+VLA  F T VAII++ K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVSM----FSSGISDDVLANVFNTHVAIIRNDK

A0A6J1CLL1 Germin-like protein2.5e-2079.45Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK
        QTLQVGD FLFPKGLLHFQFNSDPLNSATAIAAF  ANAG V    S+FSSGISDDVLA  FNTHVA++R  K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK

A0A7J6W983 Germin-like protein1.9e-1257.53Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK
        QTLQ+GD+F+FPKGL+H+Q+N++P + ATAI+AF  ANAG V    S+FS+GI DD+LA  F T VA I+  K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIV----SMFSSGISDDVLANVFNTHVAIIRNDK

SwissProt top hitse value%identityAlignment
Q652P9 Germin-like protein 9-34.0e-0747.95Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVS----MFSSGISDDVLANVFNTHVAIIRNDK
        Q L  GD+F+FPKG++HFQFNS     A A++AF  A AG+VS    +F + I D VLA  F T V  I+  K
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAF--ANAGIVS----MFSSGISDDVLANVFNTHVAIIRNDK

Q652Q0 Putative germin-like protein 9-23.1e-0747.83Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANA--GI----VSMFSSGISDDVLANVFNTHVAII
        Q L  GD+F+FPKG++HFQFNS     A A++AF +A  G+    V++F +GI D VLA  F T V  I
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANA--GI----VSMFSSGISDDVLANVFNTHVAII

Q652Q1 Germin-like protein 9-12.4e-0744.93Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANA--GIVS----MFSSGISDDVLANVFNTHVAII
        QTLQ GD+F+FPKG++HFQFN+     A A +AF +A  G +S    +F SGI D +L    +T  A +
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANA--GIVS----MFSSGISDDVLANVFNTHVAII

Q6YZA9 Germin-like protein 8-24.0e-0745.07Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIV----SMFSSG--ISDDVLANVFNTHVAII
        + L  GDVF+FP+GL+HFQFN +P   A AIAA +  N G++    ++F S   ISDD+L   F     II
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIV----SMFSSG--ISDDVLANVFNTHVAII

Q6YZB2 Putative germin-like protein 8-11.4e-0745.07Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIVSMFSS------GISDDVLANVFNTHVAII
        + L  GDVF+FPKGL+HFQFN DP   A A +A +  N GI+++ ++       ISDD+LA  F     II
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIVSMFSS------GISDDVLANVFNTHVAII

Arabidopsis top hitse value%identityAlignment
AT1G09560.1 germin-like protein 53.0e-0536.25Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANAGIVSMFSSG---------ISDDVLANVFNTHVAIIRNDKWSYK
        Q+L+ GDVF FPKGL+HFQ N+  +  A+ IAAF N+ +    S G         + D++LA  F T    +++ K  ++
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANAGIVSMFSSG---------ISDDVLANVFNTHVAIIRNDKWSYK

AT1G10460.1 germin-like protein 73.3e-0444.44Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN
        Q L  G+ F+FPKGL+HF +N D ++SA A++  ++
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN

AT3G62020.1 germin-like protein 103.3e-0434.38Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN--------AGIVSMFSSGISDDVLANVF
        +T++ G+VF+FP+GL+H+Q N+D    A+ I+AF +        A  +   +  I D VL   F
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN--------AGIVSMFSSGISDDVLANVF

AT3G62020.2 germin-like protein 103.3e-0434.38Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN--------AGIVSMFSSGISDDVLANVF
        +T++ G+VF+FP+GL+H+Q N+D    A+ I+AF +        A  +   +  I D VL   F
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFAN--------AGIVSMFSSGISDDVLANVF

AT4G14630.1 germin-like protein 91.9e-0742.47Show/hide
Query:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIVSMFSS------GISDDVLANVFNTHVAIIRN
        +TL VGDVF+FP+GL+HFQFN      A AIAA +  NAG++++ ++       +  +VLA  F   V  +RN
Subjt:  QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFA--NAGIVSMFSS------GISDDVLANVFNTHVAIIRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAACTCTTCAAGTTGGGGATGTATTTTTGTTCCCTAAAGGATTGCTTCACTTCCAGTTCAACTCCGACCCTCTCAACTCCGCCACCGCCATCGCTGCCTTCGCCAACGC
CGGTATCGTGTCGATGTTTTCGAGTGGGATAAGTGATGATGTTCTTGCTAACGTTTTCAATACTCATGTAGCTATCATTCGGAATGATAAATGGAGTTACAAGTTACCCC
TAAAT
mRNA sequenceShow/hide mRNA sequence
CAAACTCTTCAAGTTGGGGATGTATTTTTGTTCCCTAAAGGATTGCTTCACTTCCAGTTCAACTCCGACCCTCTCAACTCCGCCACCGCCATCGCTGCCTTCGCCAACGC
CGGTATCGTGTCGATGTTTTCGAGTGGGATAAGTGATGATGTTCTTGCTAACGTTTTCAATACTCATGTAGCTATCATTCGGAATGATAAATGGAGTTACAAGTTACCCC
TAAAT
Protein sequenceShow/hide protein sequence
QTLQVGDVFLFPKGLLHFQFNSDPLNSATAIAAFANAGIVSMFSSGISDDVLANVFNTHVAIIRNDKWSYKLPLN