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MS002842 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002842
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold359:148249..148596
RNA-Seq ExpressionMS002842
SyntenyMS002842
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7838985.1 reverse transcriptase [Senna tora]2.3e-0633.61Show/hide
Query:  VRDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAVRT
        +R+  GQ++++ + RI A  DP +    AL  G++LAT L FQ ++ E D L LVN+   GS   T  ++ M+D +NL  +F +F+L H  R  NR    
Subjt:  VRDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAVRT

Query:  ASVALHSEIFAYWSSVFPD
             H+ +       FP+
Subjt:  ASVALHSEIFAYWSSVFPD

XP_021839401.1 uncharacterized protein LOC110779175 [Spinacia oleracea]1.6e-0436.08Show/hide
Query:  VRDERGQIIVAVSRRIDAYHDPLM---GALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRA
        +RD RG ++VA  +R DA   P +      L GV LA RL ++ V  E D++ +V  I    E      ++  DIR +   F  FK +HVRR  N A
Subjt:  VRDERGQIIVAVSRRIDAYHDPLM---GALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRA

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]2.5e-2151.28Show/hide
Query:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT
        R+E+GQI+ A SRR++AYHDPLM    ALLEG+RLA  LN Q VQFE DSLQL+NL+         SNVW++DIR L +NF +F  +HV R +N+A  R 
Subjt:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT

Query:  ASVALHSEIFAYWSSVF
        AS A+  +   +W+ +F
Subjt:  ASVALHSEIFAYWSSVF

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]3.2e-0833.61Show/hide
Query:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT
        ++++G+IIVA+ R++D +++PL     A+LEG+ L   L+   VQ + DS   +NLI    +     NVW+ DI     NF +   +H++R ++    R 
Subjt:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT

Query:  ASVALHSEIFAYWSSVFPD
        AS A+ S     W S FP+
Subjt:  ASVALHSEIFAYWSSVFPD

XP_024172178.1 uncharacterized protein LOC112178232 [Rosa chinensis]1.6e-0434.02Show/hide
Query:  VRDERGQIIVAVSR----RIDAYHDPLMGALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNR
        +RDERG  + A  +        +H  LM ALLEG++LA  LN+  V FE D L LV+ +   +   +   + + +++ ++   P F+LIH +R  NR
Subjt:  VRDERGQIIVAVSR----RIDAYHDPLMGALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNR

TrEMBL top hitse value%identityAlignment
A0A2I4DVZ3 uncharacterized protein LOC1089839713.9e-0428.81Show/hide
Query:  VRDERGQIIVAVSRRIDAYHDPL---MGALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAVRT
        +RDE G+++ A ++  DA   P+   + A+L G++L   L    +  E D L LV  + G  E  + +   +KD + L+++FP  ++ HV R  NR    
Subjt:  VRDERGQIIVAVSRRIDAYHDPL---MGALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAVRT

Query:  AS--VALHSEIFAYWSSV
         +    +  +I  +W SV
Subjt:  AS--VALHSEIFAYWSSV

A0A3L6T4P5 RNase H domain-containing protein6.7e-0437.27Show/hide
Query:  VRDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVK-NFPNFKLIHVRRPTNRAVR
        VRD  GQ IVA   R++A HD L     A L  ++ A  +    V  E DS+ LVN +  GS  +    V  K+IR L++ +F     IHV R  N   R
Subjt:  VRDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVK-NFPNFKLIHVRRPTNRAVR

Query:  TASVALHSEI
        +A    HSE+
Subjt:  TASVALHSEI

A0A6J1CNR4 uncharacterized protein LOC1110129501.2e-2151.28Show/hide
Query:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT
        R+E+GQI+ A SRR++AYHDPLM    ALLEG+RLA  LN Q VQFE DSLQL+NL+         SNVW++DIR L +NF +F  +HV R +N+A  R 
Subjt:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT

Query:  ASVALHSEIFAYWSSVF
        AS A+  +   +W+ +F
Subjt:  ASVALHSEIFAYWSSVF

A0A6J1DJL6 uncharacterized protein LOC1110217111.5e-0833.61Show/hide
Query:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT
        ++++G+IIVA+ R++D +++PL     A+LEG+ L   L+   VQ + DS   +NLI    +     NVW+ DI     NF +   +H++R ++    R 
Subjt:  RDERGQIIVAVSRRIDAYHDPLMG---ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAV-RT

Query:  ASVALHSEIFAYWSSVFPD
        AS A+ S     W S FP+
Subjt:  ASVALHSEIFAYWSSVFPD

A0A803NG99 Uncharacterized protein3.0e-0430.16Show/hide
Query:  VRDERGQIIVAVSRRIDAYHDPLMG----------ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRP
        +RD RG ++ A+SR       P +G          AL   ++ +  +N Q+ + E DSL LV  I   +         + D++NL+ NFPN  + HVRR 
Subjt:  VRDERGQIIVAVSRRIDAYHDPLMG----------ALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRP

Query:  TNRAVR-TASVALHSEIFAYWSSVFP
         N+A    A  AL  +  + W    P
Subjt:  TNRAVR-TASVALHSEIFAYWSSVFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTAGAGATGAAAGGGGTCAAATTATTGTAGCCGTTTCTCGAAGGATAGATGCTTACCACGATCCTTTGATGGGCGCTTTGCTTGAAGGTGTCCGTCTGGCGACGAGGTT
GAATTTCCAGCTGGTGCAGTTTGAGTATGATTCCCTCCAACTGGTTAATCTGATTCTTGGAGGCTCTGAAGTTCAAACTGATTCCAATGTTTGGATGAAGGATATTCGGA
ATTTGGTGAAGAATTTCCCTAATTTCAAGTTAATCCATGTGCGGCGTCCCACGAACAGGGCCGTCCGGACGGCGTCCGTCGCCCTTCATTCTGAGATTTTTGCTTATTGG
TCTTCTGTTTTTCCAGAT
mRNA sequenceShow/hide mRNA sequence
GTTAGAGATGAAAGGGGTCAAATTATTGTAGCCGTTTCTCGAAGGATAGATGCTTACCACGATCCTTTGATGGGCGCTTTGCTTGAAGGTGTCCGTCTGGCGACGAGGTT
GAATTTCCAGCTGGTGCAGTTTGAGTATGATTCCCTCCAACTGGTTAATCTGATTCTTGGAGGCTCTGAAGTTCAAACTGATTCCAATGTTTGGATGAAGGATATTCGGA
ATTTGGTGAAGAATTTCCCTAATTTCAAGTTAATCCATGTGCGGCGTCCCACGAACAGGGCCGTCCGGACGGCGTCCGTCGCCCTTCATTCTGAGATTTTTGCTTATTGG
TCTTCTGTTTTTCCAGAT
Protein sequenceShow/hide protein sequence
VRDERGQIIVAVSRRIDAYHDPLMGALLEGVRLATRLNFQLVQFEYDSLQLVNLILGGSEVQTDSNVWMKDIRNLVKNFPNFKLIHVRRPTNRAVRTASVALHSEIFAYW
SSVFPD