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MS002848 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002848
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold359:189731..189919
RNA-Seq ExpressionMS002848
SyntenyMS002848
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0438.46Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   S+K  +AE   +P +     +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-0541.54Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-0438.46Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   S+K  L+E   +P +     +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-0541.54Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.8e-0537.31Show/hide
Query:  DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        D P W+ + DG +SV S+K  L +     ++     TF  LW    PKKCKFF+W + +  +NT D+
Subjt:  DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein5.6e-0538.46Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   S+K  +AE   +P +     +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein8.7e-0641.54Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein8.7e-0641.54Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   SIK  L+E S +P +   + +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein9.6e-0538.46Show/hide
Query:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        +P W  + + IF   S+K  L+E   +P +     +  LW + FPKKCKFF+W + H  INT D+
Subjt:  RPFWLHSRDGIFSVKSIKSKLAEDSFAPIS---ATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein3.3e-0537.31Show/hide
Query:  DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHHGINTFDK
        D P W+ + DG +SV S+K  L +     ++     TF  LW    PKKCKFF+W + +  +NT D+
Subjt:  DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISA----TFAKLWSLYFPKKCKFFLWCVFHHGINTFDK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACAGACCTTTCTGGCTTCACTCAAGAGACGGTATTTTTTCAGTAAAGTCTATAAAATCTAAGCTTGCTGAAGATTCTTTTGCTCCAATTTCTGCTACCTTTGCTAAGCT
GTGGAGTTTATACTTTCCTAAAAAATGCAAGTTTTTTCTATGGTGCGTCTTCCATCATGGTATTAACACATTTGATAAG
mRNA sequenceShow/hide mRNA sequence
GACAGACCTTTCTGGCTTCACTCAAGAGACGGTATTTTTTCAGTAAAGTCTATAAAATCTAAGCTTGCTGAAGATTCTTTTGCTCCAATTTCTGCTACCTTTGCTAAGCT
GTGGAGTTTATACTTTCCTAAAAAATGCAAGTTTTTTCTATGGTGCGTCTTCCATCATGGTATTAACACATTTGATAAG
Protein sequenceShow/hide protein sequence
DRPFWLHSRDGIFSVKSIKSKLAEDSFAPISATFAKLWSLYFPKKCKFFLWCVFHHGINTFDK