; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002854 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002854
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold359:226392..227225
RNA-Seq ExpressionMS002854
SyntenyMS002854
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012717.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-13484.89Show/hide
Query:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL +N  K I+IREVWASNLESEF+LIRD ID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++SLP+RL+EFLGVLR
Subjt:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR

Query:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE

XP_022142408.1 probable CCR4-associated factor 1 homolog 11 [Momordica charantia]6.2e-15999.64Show/hide
Query:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
        MVVQDLKNNSK IQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
Subjt:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG

Query:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
        GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
Subjt:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF

Query:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL
        FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL
Subjt:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL

XP_022945861.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]1.3e-13585.61Show/hide
Query:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL NN  K I+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++SLP+RL+EFLGVLR
Subjt:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR

Query:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE

XP_022967098.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]1.1e-13484.89Show/hide
Query:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL NN  K I+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++ LP+R++EFLGVLR
Subjt:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR

Query:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE

XP_038877224.1 probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]1.1e-13986.28Show/hide
Query:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
        MV+ DL  N+K I+IREVWASNLESEF+LIRDLIDQFPCVSMDTEFPG+VF DPA+P++ Q++PSDHYRLLKSNVDAL+LIQIGITLSDSDGNLPDLGT 
Subjt:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG

Query:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
         +RFIWEFNFMDFDVARD+HAPDSIELLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVK+LT+R LP R++EFLGVLRVF
Subjt:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF

Query:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        FGD VYD+KY+MRFC+SLYGGLDRIAKILNV+RAVGKCHQAGSDSLLTWHAFQKMRDTYFVQN ++KHAGVLYGLEV
Subjt:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

TrEMBL top hitse value%identityAlignment
A0A0A0LYC8 Poly(A)-specific ribonuclease7.2e-12981.23Show/hide
Query:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
        M++ DL  N K IQIREVWASNLESEF LIRDLIDQFPCVSMDTEFPGV+F     P    N PS HY+ LKSNVD L+LIQIGITLSDSDGNLPDLGTG
Subjt:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG

Query:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
         +RFIWEFNF DFDVARD+HAP+SIELLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+LT + LP  LE+FLGV+R+F
Subjt:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF

Query:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        FGD VYD+KY+MRFC+SLYGGLDRIAK +NV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQ  + KHAGVLYGLEV
Subjt:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

A0A5J5C461 Poly(A)-specific ribonuclease7.2e-12980.8Show/hide
Query:  DLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVF---TDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGG
        D +   K I IREVWA NLESEFELI DLID++P +SMDTEFPGVVF    DPAKPYHRQ RPSDHY++LKSNVDALNLIQ+G+TLSD+ GNLPD+GT G
Subjt:  DLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVF---TDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGG

Query:  SRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFF
         RFIWEFNF DFDV RDVHAPDS+ELL+RQGIDFDRNRVEG+DS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+LTRR LP+ L++FLGVLRVFF
Subjt:  SRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFF

Query:  GDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        G++VYDVK++M+FC+SLYGGLDR+A+ L V RAVGKCHQAGSDSLLTWHAFQKMRD YFV+NG EKHAGVLYGLEV
Subjt:  GDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

A0A6J1CN71 Poly(A)-specific ribonuclease3.0e-15999.64Show/hide
Query:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
        MVVQDLKNNSK IQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG
Subjt:  MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTG

Query:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
        GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
Subjt:  GSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF

Query:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL
        FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL
Subjt:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL

A0A6J1G223 Poly(A)-specific ribonuclease6.1e-13685.61Show/hide
Query:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL NN  K I+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++SLP+RL+EFLGVLR
Subjt:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR

Query:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE

A0A6J1HU54 Poly(A)-specific ribonuclease5.2e-13584.89Show/hide
Query:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL NN  K I+IREVWASNLESEF+LIRDLID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVVQDLKNNS-KLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNR-PSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++ LP+R++EFLGVLR
Subjt:  TGGSRFIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLR

Query:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLE

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 112.2e-11172.22Show/hide
Query:  SKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDL-GTGGSRFIWEF
        S +I IR+VWA NLESEF+LIR +++ +P +SMDTEFPGV++        R N P+  Y LLKSNVDAL+LIQ+G+TLSD+DGNLPDL G    R+IWEF
Subjt:  SKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDL-GTGGSRFIWEF

Query:  NFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDV
        NF DFDV RD HAPDSIELLRR GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVK+LTRR LP  L EFLG+LR FFGD+VYDV
Subjt:  NFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDV

Query:  KYMMRFCKS-LYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        K++MRFC+  LYGGLDR+A+ L V+RAVGKCHQAGSDSLLTW AFQ+MRD YFV++G EKHAGVLYGLEV
Subjt:  KYMMRFCKS-LYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

Q9LEU4 Probable CCR4-associated factor 1 homolog 104.0e-7653.43Show/hide
Query:  VVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGG
        + + LK +S  I IREVW  NL  EF LIR+++D+F  ++MDTEFPGVV   P   +   N    +YR LK NVD L LIQ+G+T SD +GNLP  GT  
Subjt:  VVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGG

Query:  SRF-IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF
         +F IW+FNF +F++  D++A +SIELLR+ GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT + LP +  +F  +L V+
Subjt:  SRF-IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVF

Query:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        F   VYD+K++M FC  L+GGL+R+A+++ V R VG CHQAGSDSLLT  +F+K+++ YF     EK+ GVLYGL V
Subjt:  FGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

Q9LXM2 Probable CCR4-associated factor 1 homolog 93.2e-11071.01Show/hide
Query:  QDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSR
        +DLK +   +  REVWA NLESEFELI ++ID +P +SMDTEFPGV+F    K   R   P D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG    R
Subjt:  QDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSR

Query:  -FIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFG
         FIWEFNF DFDVARD HAPDSIELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+K+LTRR LP  L EF  V+RV FG
Subjt:  -FIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFG

Query:  DQVYDVKYMMRFC-KSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        ++VYDVK+MM+FC + L+GGLDR+A+ L V+RAVGKCHQAGSDSLLTWHAFQ+MRD YFVQ+G EKHAGVLYGLEV
Subjt:  DQVYDVKYMMRFC-KSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.8e-7653.48Show/hide
Query:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF
        LK++S  IQIREVW  NL+ E +LIRD++D FP V+MDTEFPG+V     +P       +D HY  LK+NV+ L +IQ+G+T S+  GNLP  GT     
Subjt:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF

Query:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ
        IW+FNF +FD+  D+ A DSIELL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   
Subjt:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ

Query:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        VYD+K++M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   F+K+++ +FV   L K++GVLYGL V
Subjt:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

Q9SKZ2 Probable CCR4-associated factor 1 homolog 78.6e-7954.41Show/hide
Query:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFI
        LK++S  IQIREVW  NLESE  LIR+++D FP V+MDTEFPG+V   P   +  +     HY  LK+NV+ L +IQ+G+T SD  GNLP  GT     I
Subjt:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFI

Query:  WEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQV
        W+FNF +FD+  D++A DSIELLR+ GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F  +V
Subjt:  WEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQV

Query:  YDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        YD+K++M+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   F+K+++ +F+   +EK++GVLYGL V
Subjt:  YDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-7753.48Show/hide
Query:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF
        LK++S  IQIREVW  NL+ E +LIRD++D FP V+MDTEFPG+V     +P       +D HY  LK+NV+ L +IQ+G+T S+  GNLP  GT     
Subjt:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF

Query:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ
        IW+FNF +FD+  D+ A DSIELL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   
Subjt:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ

Query:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        VYD+K++M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   F+K+++ +FV   L K++GVLYGL V
Subjt:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-7753.48Show/hide
Query:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF
        LK++S  IQIREVW  NL+ E +LIRD++D FP V+MDTEFPG+V     +P       +D HY  LK+NV+ L +IQ+G+T S+  GNLP  GT     
Subjt:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSD-HYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRF

Query:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ
        IW+FNF +FD+  D+ A DSIELL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   
Subjt:  IWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQ

Query:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        VYD+K++M+FC SL+GGL+++A++L V R VG CHQAGSDSLLT   F+K+++ +FV   L K++GVLYGL V
Subjt:  VYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.1e-8054.41Show/hide
Query:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFI
        LK++S  IQIREVW  NLESE  LIR+++D FP V+MDTEFPG+V   P   +  +     HY  LK+NV+ L +IQ+G+T SD  GNLP  GT     I
Subjt:  LKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFI

Query:  WEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQV
        W+FNF +FD+  D++A DSIELLR+ GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F  +V
Subjt:  WEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQV

Query:  YDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        YD+K++M+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   F+K+++ +F+   +EK++GVLYGL V
Subjt:  YDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-11171.01Show/hide
Query:  QDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSR
        +DLK +   +  REVWA NLESEFELI ++ID +P +SMDTEFPGV+F    K   R   P D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG    R
Subjt:  QDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSR

Query:  -FIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFG
         FIWEFNF DFDVARD HAPDSIELLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+K+LTRR LP  L EF  V+RV FG
Subjt:  -FIWEFNFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFG

Query:  DQVYDVKYMMRFC-KSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        ++VYDVK+MM+FC + L+GGLDR+A+ L V+RAVGKCHQAGSDSLLTWHAFQ+MRD YFVQ+G EKHAGVLYGLEV
Subjt:  DQVYDVKYMMRFC-KSLYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-11272.22Show/hide
Query:  SKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDL-GTGGSRFIWEF
        S +I IR+VWA NLESEF+LIR +++ +P +SMDTEFPGV++        R N P+  Y LLKSNVDAL+LIQ+G+TLSD+DGNLPDL G    R+IWEF
Subjt:  SKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDL-GTGGSRFIWEF

Query:  NFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDV
        NF DFDV RD HAPDSIELLRR GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVK+LTRR LP  L EFLG+LR FFGD+VYDV
Subjt:  NFMDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDV

Query:  KYMMRFCKS-LYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV
        K++MRFC+  LYGGLDR+A+ L V+RAVGKCHQAGSDSLLTW AFQ+MRD YFV++G EKHAGVLYGLEV
Subjt:  KYMMRFCKS-LYGGLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTCCAGGATCTGAAGAACAACAGTAAACTGATCCAAATCCGTGAAGTTTGGGCGTCGAATCTCGAATCGGAGTTCGAGTTGATTCGCGACTTGATCGATCAGTT
TCCTTGCGTTTCCATGGACACGGAGTTTCCCGGAGTCGTTTTCACCGATCCTGCGAAGCCGTACCACCGCCAGAATCGGCCGTCGGACCACTACCGCCTCCTCAAATCCA
ACGTCGACGCTCTGAATCTGATCCAGATCGGAATCACTCTCTCCGACTCCGACGGCAACCTCCCGGACCTCGGCACCGGCGGCAGCCGCTTCATCTGGGAGTTCAACTTC
ATGGACTTCGACGTGGCGCGTGACGTCCACGCGCCTGACTCGATCGAGCTTCTGCGGCGGCAGGGGATCGACTTCGACCGGAACCGAGTGGAAGGGATCGACTCTTGCCG
GTTCGCCGAGTTGATGATGTCCTCGGGACTCGTCTGCAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTACGATTTCGGGTACCTGGTCAAGGTTTTGACTCGGC
GGAGCCTCCCGAGTCGGCTGGAGGAATTCCTCGGCGTTCTCAGGGTTTTCTTCGGCGATCAGGTGTACGATGTGAAGTACATGATGCGGTTCTGTAAGAGCCTCTACGGC
GGTTTGGACCGGATCGCGAAGATCTTAAACGTGAGCCGGGCGGTTGGAAAGTGCCACCAGGCCGGTTCGGATAGCCTGCTGACGTGGCATGCGTTTCAGAAAATGAGGGA
CACGTATTTTGTACAGAATGGGCTAGAGAAACATGCCGGCGTGTTGTATGGATTGGAAGTTCTG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTCCAGGATCTGAAGAACAACAGTAAACTGATCCAAATCCGTGAAGTTTGGGCGTCGAATCTCGAATCGGAGTTCGAGTTGATTCGCGACTTGATCGATCAGTT
TCCTTGCGTTTCCATGGACACGGAGTTTCCCGGAGTCGTTTTCACCGATCCTGCGAAGCCGTACCACCGCCAGAATCGGCCGTCGGACCACTACCGCCTCCTCAAATCCA
ACGTCGACGCTCTGAATCTGATCCAGATCGGAATCACTCTCTCCGACTCCGACGGCAACCTCCCGGACCTCGGCACCGGCGGCAGCCGCTTCATCTGGGAGTTCAACTTC
ATGGACTTCGACGTGGCGCGTGACGTCCACGCGCCTGACTCGATCGAGCTTCTGCGGCGGCAGGGGATCGACTTCGACCGGAACCGAGTGGAAGGGATCGACTCTTGCCG
GTTCGCCGAGTTGATGATGTCCTCGGGACTCGTCTGCAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTACGATTTCGGGTACCTGGTCAAGGTTTTGACTCGGC
GGAGCCTCCCGAGTCGGCTGGAGGAATTCCTCGGCGTTCTCAGGGTTTTCTTCGGCGATCAGGTGTACGATGTGAAGTACATGATGCGGTTCTGTAAGAGCCTCTACGGC
GGTTTGGACCGGATCGCGAAGATCTTAAACGTGAGCCGGGCGGTTGGAAAGTGCCACCAGGCCGGTTCGGATAGCCTGCTGACGTGGCATGCGTTTCAGAAAATGAGGGA
CACGTATTTTGTACAGAATGGGCTAGAGAAACATGCCGGCGTGTTGTATGGATTGGAAGTTCTG
Protein sequenceShow/hide protein sequence
MVVQDLKNNSKLIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHRQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNF
MDFDVARDVHAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKVLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYG
GLDRIAKILNVSRAVGKCHQAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEVL